| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039419 |
| Family | CE8 |
| Protein Properties | Length: 540 Molecular Weight: 60237.6 Isoelectric Point: 9.0137 |
| Chromosome | Chromosome/Scaffold: 05 Start: 23270522 End: 23274012 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 237 | 522 | 0 |
| AVVSVDGKGKYRTINEAINEAPNHSTKRYVIYVKKGLYRENIDMKKKKTNIMLVGDGIGQTIITGDRNFLQGLTTFRTATVAVSGRGFIARDITFRNTAG PHNRQAVALRVDSDQSAFFRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPNQNTGFVIMNSYVLA TQPTYLGRPWKLYSRTVYMNTYVSQLVQPRGWLEWFGNFALDTLWYGEYNNIGPGWRASGRVKWPGYHIMDKRTAMSFTVGSFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 540 Download |
| MGMTALLFVT TLMFVHAFSS QTQLFKPYKE ENVQSLVAKA CQFIDAHDSC VSNIRTHIQE 60 SGHGLTPHSV LTAAVKEAHD KAKLAMQGIP TVTTLSFRSR EQIAIEDCKE LVGFSVSELA 120 WSMLEMNKLH GGGGIDGDSH DAAGGNLKTW LSAAMSNQDT CLEGFEGTER KYEEMIKGSL 180 RQVTQLVSNV LDMYTQLNAL PFKPSRNESS VLSPEWLSET DESLMTRLNP SAMHPDAVVS 240 VDGKGKYRTI NEAINEAPNH STKRYVIYVK KGLYRENIDM KKKKTNIMLV GDGIGQTIIT 300 GDRNFLQGLT TFRTATVAVS GRGFIARDIT FRNTAGPHNR QAVALRVDSD QSAFFRCSME 360 GYQDTLYAHS LRQFYRECEI YGTIDFIFGN GAAVLQNCKI YTRVPLPLQK VTITAQGRKS 420 PNQNTGFVIM NSYVLATQPT YLGRPWKLYS RTVYMNTYVS QLVQPRGWLE WFGNFALDTL 480 WYGEYNNIGP GWRASGRVKW PGYHIMDKRT AMSFTVGSFI DGRRWLPATG VTFTAGLAN* 540 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 2.0e-148 | 6 | 537 | 546 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 3.0e-157 | 91 | 538 | 469 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 2.0e-176 | 67 | 538 | 490 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02506 | PLN02506 | 0 | 1 | 539 | 544 | + putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 236 | 522 | 297 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_187213.1 | 0 | 1 | 539 | 1 | 543 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002279144.1 | 0 | 17 | 539 | 43 | 571 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002318977.1 | 0 | 1 | 539 | 1 | 539 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330224.1 | 0 | 39 | 539 | 2 | 502 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512462.1 | 0 | 32 | 539 | 30 | 535 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 231 | 537 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 236 | 537 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-22 | 240 | 491 | 12 | 310 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-22 | 240 | 491 | 12 | 310 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-22 | 240 | 491 | 12 | 310 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
