| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039420 |
| Family | CE8 |
| Protein Properties | Length: 560 Molecular Weight: 60858 Isoelectric Point: 5.8333 |
| Chromosome | Chromosome/Scaffold: 05 Start: 23274555 End: 23276824 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 253 | 542 | 0 |
| GDAYKTINDAIAAAPTKAESENGYFVIYVVAGVYEEYVTVPSNKSYVMIIGDGIDKTIITGNRNVVDGSTTFASATLAVIGRGFTAANITVRNTAGPTKH QAVAVRNSADMSAFYKCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAATVLQNCNLIPRLPLQGQFNAITAQGRSDPNQNTGISIQNCRITPSAEL VSSNFSVKTYLGRPWKEYSRTVYLQNFMDGFIDAKGWNEWMGDFALQTLYYAEFMNTGPGSETANRVNWPGYHVINETEAVWFTVSNFIV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 560 Download |
| MAQNSILFTA ISLLLFSIFS HCQALTSLEA LCDSTPHPPV CKSVLPVGSP GSVSGFASIV 60 ILKSLEASKH LLASFDQHHP TSGPLDDCQL LAGLTVDQLT RVNVIKETVL GTSEVNDLLT 120 LLSAALTNYE TCLGSFHDVT GESSENFVKD RHDILTRVSD GIKLISVSLA LSKEAWPIAS 180 DASATKPPPR ILTEDEKKSS LPEVSYVKVT ERERMIYERV KVLGRKLLQS SPGGNGGLKV 240 AKTVVVNPNG INGDAYKTIN DAIAAAPTKA ESENGYFVIY VVAGVYEEYV TVPSNKSYVM 300 IIGDGIDKTI ITGNRNVVDG STTFASATLA VIGRGFTAAN ITVRNTAGPT KHQAVAVRNS 360 ADMSAFYKCS FEGYQDTLYV HSLRQFYREC DIYGTVDFIF GNAATVLQNC NLIPRLPLQG 420 QFNAITAQGR SDPNQNTGIS IQNCRITPSA ELVSSNFSVK TYLGRPWKEY SRTVYLQNFM 480 DGFIDAKGWN EWMGDFALQT LYYAEFMNTG PGSETANRVN WPGYHVINET EAVWFTVSNF 540 IVGDYWLPSM GVPYAGGLM* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 7.0e-141 | 85 | 558 | 480 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 7.0e-148 | 26 | 558 | 545 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 3.0e-160 | 32 | 559 | 556 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| pfam01095 | Pectinesterase | 2.0e-174 | 244 | 544 | 302 | + Pectinesterase. | ||
| PLN02713 | PLN02713 | 0 | 1 | 558 | 581 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK84428.1 | 0 | 6 | 559 | 4 | 561 | papillar cell-specific pectin methylesterase-like protein [Brassica napus] |
| DDBJ | BAF42040.1 | 0 | 29 | 559 | 38 | 564 | pectin methylesterase 3 [Pyrus communis] |
| RefSeq | NP_567227.1 | 0 | 10 | 559 | 3 | 572 | ATPMEPCRB; pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002302726.1 | 0 | 24 | 559 | 30 | 558 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320332.1 | 0 | 31 | 559 | 39 | 560 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 245 | 558 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 240 | 558 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 9e-26 | 244 | 550 | 6 | 341 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 9e-26 | 244 | 550 | 6 | 341 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-25 | 244 | 550 | 6 | 341 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
