| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039694 |
| Family | CE8 |
| Protein Properties | Length: 587 Molecular Weight: 63739.6 Isoelectric Point: 8.7889 |
| Chromosome | Chromosome/Scaffold: 06 Start: 503213 End: 505604 |
| Description | pectin methylesterase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 280 | 571 | 0 |
| DVTVAGDGTGDVKTVNEAVARVPKKSLKVFVIYVKGGTYVENVVMDKGKWNVMIYGDGKTKTIISGSKNFVDGTPTYETATFAIQGKGFIMKDIGIINTA GAVKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRDCDVTGTIDFIFGSAAVVFQGCKIMPREPLPRQFNTITAQGKKDPNQNSGMSIQRCSIS GNGKVTAPTYLGRPWKAFSTTVIMETEIGAVVRASGWMSWVSGVDPPASIVYGEYRNTGPGADVSKRVKWAGYKPVMSDAEAGRFTVGTMLH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 587 Download |
| MDSVQSFKGY GKVDEAQDLA LKKNTRTRLI LLSISGLILL AVIISAVVAA VVHTKNKNSS 60 ESTPSPPPEL TPSTSLKTIC SVTRYPESCF YSISKLPASN TTDPAILFKL SLKLIIDELD 120 GISDLPEKLA KETEDVRIKS ALRVCGEMIE DALDRLNDTV SVMDDDGSNK KTLNSSTVDD 180 LKTWLSATVT DHETCFDSLD ELAQNKTEYA NSNITQSLKS AMSRSTEFTS NSLAIVAKIL 240 AALSDFGVPI HRRRRLLVSQ QQTPEWARRR LLQTAGLKPD VTVAGDGTGD VKTVNEAVAR 300 VPKKSLKVFV IYVKGGTYVE NVVMDKGKWN VMIYGDGKTK TIISGSKNFV DGTPTYETAT 360 FAIQGKGFIM KDIGIINTAG AVKHQAVAFR SGSDFSVYYQ CSFDGFQDTL YPHSNRQFYR 420 DCDVTGTIDF IFGSAAVVFQ GCKIMPREPL PRQFNTITAQ GKKDPNQNSG MSIQRCSISG 480 NGKVTAPTYL GRPWKAFSTT VIMETEIGAV VRASGWMSWV SGVDPPASIV YGEYRNTGPG 540 ADVSKRVKWA GYKPVMSDAE AGRFTVGTML HGGGWIQSAG VAHQLS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 4.0e-144 | 80 | 582 | 520 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 4.0e-148 | 79 | 584 | 519 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 8.0e-175 | 280 | 572 | 298 | + Pectinesterase. | ||
| PLN02468 | PLN02468 | 2.0e-180 | 7 | 584 | 586 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 0 | 1 | 586 | 593 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65650.1 | 0 | 1 | 586 | 1 | 586 | pectinesterase, putative [Arabidopsis thaliana] |
| RefSeq | NP_175787.1 | 0 | 1 | 586 | 1 | 586 | ATPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002265217.1 | 0 | 1 | 586 | 1 | 577 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002304256.1 | 0 | 1 | 584 | 1 | 585 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532945.1 | 0 | 1 | 581 | 1 | 583 | Pectinesterase-3 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 280 | 583 | 4 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 273 | 578 | 1 | 310 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 5e-16 | 292 | 575 | 19 | 337 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 5e-16 | 292 | 575 | 19 | 337 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 5e-16 | 292 | 575 | 19 | 337 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
