| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039705 |
| Family | GH1 |
| Protein Properties | Length: 545 Molecular Weight: 62152.1 Isoelectric Point: 6.3462 |
| Chromosome | Chromosome/Scaffold: 08 Start: 6543504 End: 6546217 |
| Description | thioglucoside glucohydrolase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH1 | 42 | 517 | 0 |
| SSFEKDFIFGVASSAYQACCLGRGLNVWDGFTHRYPNKSGPDHGNGDTTCDSFSYWQKDIDVLDELNATGYRFSIAWSRIIPRGKRSRGVNKDGINYYHG LIDGLIDKGITPFVTLFHWDLPQVLQDEYEGFLDPQIIHDFKDYANLCFQEFGHKVKNWLTINQLYTVPTRGYGAGSDAPGRCSPMVDPTCYAGNSSTEP YIVAHNQLLAHATVVDLYRKNYSHQGGKIGPVMITRWFLPYNDTDPDSIAAPERMKEFFLGWFMGPLTNGTYPQIMIDTVGDRLPSFSPEESNLVKGSYD FLGLNYYVTQYAQPSPNPVHWANHTAMMDAGAKLTYINASNHYIGPLFEANSDETENSYYYPKGIYYVMDYFKTKYYNPLIYVTENGISTPGNETRDESM FDYKRIEYLCSHLCFLSKVIKEKHVNVKGYFAWSLGDNYEFDKGFTVRFGLSYIDWNNVTDRDLKLSGKWYQKFIS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 545 Download |
| MKHLGLILAF LLALATCKAD EEITCEENLP FKCSQPDRLN SSSFEKDFIF GVASSAYQAC 60 CLGRGLNVWD GFTHRYPNKS GPDHGNGDTT CDSFSYWQKD IDVLDELNAT GYRFSIAWSR 120 IIPRGKRSRG VNKDGINYYH GLIDGLIDKG ITPFVTLFHW DLPQVLQDEY EGFLDPQIIH 180 DFKDYANLCF QEFGHKVKNW LTINQLYTVP TRGYGAGSDA PGRCSPMVDP TCYAGNSSTE 240 PYIVAHNQLL AHATVVDLYR KNYSHQGGKI GPVMITRWFL PYNDTDPDSI AAPERMKEFF 300 LGWFMGPLTN GTYPQIMIDT VGDRLPSFSP EESNLVKGSY DFLGLNYYVT QYAQPSPNPV 360 HWANHTAMMD AGAKLTYINA SNHYIGPLFE ANSDETENSY YYPKGIYYVM DYFKTKYYNP 420 LIYVTENGIS TPGNETRDES MFDYKRIEYL CSHLCFLSKV IKEKHVNVKG YFAWSLGDNY 480 EFDKGFTVRF GLSYIDWNNV TDRDLKLSGK WYQKFISPAI KNPLKKDFLR SSLTFEKNKK 540 FADA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02998 | PLN02998 | 3.0e-98 | 38 | 523 | 493 | + beta-glucosidase | ||
| PLN02849 | PLN02849 | 1.0e-105 | 32 | 544 | 520 | + beta-glucosidase | ||
| TIGR03356 | BGL | 5.0e-108 | 46 | 512 | 473 | + beta-galactosidase. | ||
| PLN02814 | PLN02814 | 9.0e-111 | 34 | 520 | 496 | + beta-glucosidase | ||
| pfam00232 | Glyco_hydro_1 | 1.0e-174 | 40 | 517 | 484 | + Glycosyl hydrolase family 1. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1DWA | 0 | 22 | 518 | 1 | 499 | M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 1: Structure Prior To Irradiation |
| PDB | 1MYR | 0 | 20 | 518 | 1 | 501 | A Chain A, Myrosinase From Sinapis Alba |
| DDBJ | BAE16356.1 | 0 | 1 | 544 | 1 | 545 | myrosinase [Eutrema wasabi] |
| EMBL | CAA79989.2 | 0 | 1 | 544 | 1 | 527 | myrosinase, thioglucoside glucohydrolase [Brassica napus] |
| Swiss-Prot | P29736 | 0 | 20 | 518 | 1 | 501 | MYRA_SINAL RecName: Full=Myrosinase MA1; AltName: Full=Sinigrinase; AltName: Full=Thioglucosidase |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1myr_A | 0 | 20 | 518 | 1 | 501 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 2wxd_M | 0 | 20 | 518 | 1 | 501 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1w9d_M | 0 | 20 | 518 | 1 | 501 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1w9b_M | 0 | 20 | 518 | 1 | 501 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1e73_M | 0 | 20 | 518 | 1 | 501 | A Chain A, Myrosinase From Sinapis Alba |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| glucosinolate breakdown | RXN-8134 | EC-3.2.1.147 | thioglucosidase |
| glucosinolate breakdown (via thiocyanate-forming protein) | RXN-12024 | EC-3.2.1.147 | thioglucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
