| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039757 |
| Family | CBM43 |
| Protein Properties | Length: 506 Molecular Weight: 54237.5 Isoelectric Point: 5.1571 |
| Chromosome | Chromosome/Scaffold: 02 Start: 9800775 End: 9803144 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 370 | 451 | 1.1e-30 |
| CTAREGADPKMLQAALDWACGPGKIDCSPIKQGEACYEPDNVIAHANYAFDTYYHQTGNNPEACNFNGVASVTTTDPSHGLC | |||
| GH17 | 32 | 351 | 0 |
| IGVNIGTDLSDMPHPTQVVALLKVQQIRHIRLYDADPGMLIALANSGIKVIITIPNDQLLGIGQSNSTAANWVKRNVIAHYPATTITAISVGSEVLTSLS NAAPVLVSAIKNVHSALLSANLDRLIKVSTPLSTSLILDPFPPSQAFFNRSLNPVIVPLLSFLQSTNSYLMINVYPYYDYMQSNGVIPLDYALFKPIPPN KEAVDANTLVHYSNAFDAMVDATYFAMAFLNFTNIPVLVTESGWPSKGETNEPDATLDNANTYNSNLIRHVLNKTGTPKRPGIAVSTYIYELYNEDTKAG SLSEKSWGLFNANGDPVYIL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 506 Download |
| MAPHLLLPLL LLSLFVLASA SPSAPPDEGA YIGVNIGTDL SDMPHPTQVV ALLKVQQIRH 60 IRLYDADPGM LIALANSGIK VIITIPNDQL LGIGQSNSTA ANWVKRNVIA HYPATTITAI 120 SVGSEVLTSL SNAAPVLVSA IKNVHSALLS ANLDRLIKVS TPLSTSLILD PFPPSQAFFN 180 RSLNPVIVPL LSFLQSTNSY LMINVYPYYD YMQSNGVIPL DYALFKPIPP NKEAVDANTL 240 VHYSNAFDAM VDATYFAMAF LNFTNIPVLV TESGWPSKGE TNEPDATLDN ANTYNSNLIR 300 HVLNKTGTPK RPGIAVSTYI YELYNEDTKA GSLSEKSWGL FNANGDPVYI LRLTNSGSIL 360 ANDTTNQTYC TAREGADPKM LQAALDWACG PGKIDCSPIK QGEACYEPDN VIAHANYAFD 420 TYYHQTGNNP EACNFNGVAS VTTTDPSHGL CVFSGSRGSG KNGTSVNITA PSANSTSSGV 480 GSDDLYYSRG MWSILTVILN LVAFL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-12 | 61 | 344 | 293 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 9.0e-19 | 368 | 440 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-38 | 368 | 453 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-90 | 32 | 349 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG51762.1 | 0 | 43 | 447 | 1 | 404 | AC066691_2 beta-1,3-glucanase precursor, putative; 34016-35272 [Arabidopsis thaliana] |
| GenBank | ABI93926.1 | 0 | 16 | 505 | 16 | 505 | At1g66250 [Arabidopsis thaliana] |
| RefSeq | NP_176799.2 | 0 | 16 | 505 | 16 | 505 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002305879.1 | 0 | 30 | 505 | 15 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002531922.1 | 0 | 28 | 478 | 30 | 479 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 32 | 349 | 1 | 308 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 32 | 353 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 32 | 353 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 32 | 353 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 32 | 353 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
