| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039767 |
| Family | GH9 |
| Protein Properties | Length: 602 Molecular Weight: 66705.4 Isoelectric Point: 4.6725 |
| Chromosome | Chromosome/Scaffold: 01 Start: 8762306 End: 8773998 |
| Description | glycosyl hydrolase 9A3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH9 | 224 | 567 | 0 |
| SMVEAAPLHNSGSKYQSAGEITHAQGVIKWGTDYFLNSFYSNDTTISQMVSQIGSRGSGVPDDDYCWMRPEDIDYPRPVGLCFTKCSQLAAEMSAALASA SIVFKDDRDYSKKLIHVARTLYNFAESSITWLYYGTGDVDYLDRVTSHDLAERAGAFSSSDTDYGVFGWESKLLGAQLLTRLRILLGPGYPYEEMLREFH NQTGVDVANAAFLAALFSDYLEASSTPGWYCGPSFYTPKNLCDFSKSQMDYILGRNPRNLSYVVGFGERYPSQVHHRGASIPAHKKESCKGGWRWKDSNM DNPNIIQGALVAATDMDDGFQDVRTSSNYTEPTLIGNAGLVAAL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 602 Download |
| MVVFSSDQTI SNEDLENTVV DESQRHTENE GPNDLRNEKF SGFISEGTAT ESDDENERED 60 DIDPSIKSVG FNYPRVKRRK SLPDPVEKEK SVSLWSMIKD NIGKDLTKVC LPVYFNEPLS 120 SLQECFEDLE YSYLLDRTFE WGKRGNTLMR ILNVAAFAVS GYASTEGRIC KPFNPVLGET 180 YEADYPDKGL RFFSEKVSHH PMVVACHCDG TGWKFWADSL GTTSMVEAAP LHNSGSKYQS 240 AGEITHAQGV IKWGTDYFLN SFYSNDTTIS QMVSQIGSRG SGVPDDDYCW MRPEDIDYPR 300 PVGLCFTKCS QLAAEMSAAL ASASIVFKDD RDYSKKLIHV ARTLYNFAES SITWLYYGTG 360 DVDYLDRVTS HDLAERAGAF SSSDTDYGVF GWESKLLGAQ LLTRLRILLG PGYPYEEMLR 420 EFHNQTGVDV ANAAFLAALF SDYLEASSTP GWYCGPSFYT PKNLCDFSKS QMDYILGRNP 480 RNLSYVVGFG ERYPSQVHHR GASIPAHKKE SCKGGWRWKD SNMDNPNIIQ GALVAATDMD 540 DGFQDVRTSS NYTEPTLIGN AGLVAALVAL GGGGTLDKNG IFSAIPFFSP PSPPPPAPWT 600 P* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02340 | PLN02340 | 2.0e-43 | 240 | 560 | 389 | + endoglucanase | ||
| PLN02171 | PLN02171 | 1.0e-43 | 235 | 560 | 399 | + endoglucanase | ||
| pfam01237 | Oxysterol_BP | 2.0e-46 | 112 | 219 | 109 | + Oxysterol-binding protein. | ||
| pfam00759 | Glyco_hydro_9 | 5.0e-59 | 235 | 560 | 388 | + Glycosyl hydrolase family 9. | ||
| PLN02345 | PLN02345 | 2.0e-60 | 235 | 556 | 393 | + endoglucanase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAZ08322.1 | 0 | 236 | 585 | 27 | 440 | endo-1,4-beta-glucanase [Eucalyptus globulus] |
| EMBL | CAB51903.1 | 0 | 236 | 585 | 189 | 605 | cellulase; endo-1,4-beta-D-glucanase [Brassica napus] |
| EMBL | CBI29606.1 | 0 | 236 | 585 | 72 | 485 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194157.1 | 0 | 236 | 586 | 190 | 605 | ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002519394.1 | 0 | 236 | 585 | 192 | 605 | endo-1,4-beta-glucanase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 2e-23 | 220 | 571 | 65 | 432 | A Chain A, Crystal Structure Of Hyperthermophilic Beta-Glucosidase From Pyrococcus Furiosus |
| PDB | 1ksc_A | 2e-23 | 220 | 571 | 65 | 432 | A Chain A, Crystal Structure Of Hyperthermophilic Beta-Glucosidase From Pyrococcus Furiosus |
| PDB | 1ks8_A | 2e-23 | 220 | 571 | 65 | 432 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 2e-19 | 238 | 570 | 105 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 1ia7_A | 1e-16 | 221 | 596 | 68 | 438 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO796213 | 389 | 236 | 560 | 0 |
| HO794674 | 389 | 236 | 560 | 0 |
| BF010444 | 388 | 237 | 560 | 0 |
| EG697235 | 251 | 20 | 219 | 0 |
| HS273833 | 232 | 6 | 219 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
