| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039768 |
| Family | CBM22 |
| Protein Properties | Length: 985 Molecular Weight: 110801 Isoelectric Point: 6.5968 |
| Chromosome | Chromosome/Scaffold: 01 Start: 8777416 End: 8799188 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 283 | 376 | 2.1e-21 |
| ATERKAAWNGIQQEISGRCQRKRVYEVTSVVRIFGNNATSATVQATLWVLNANQREQYIAIANVQASNKDWVELKGKFLIHGSPSRIILYLEGP | |||
| CBM22 | 432 | 578 | 9.1e-39 |
| NIVENSEVRDGETQPWFTLGNCKLGVGQGAPRTLPPMARETLGSHKPLGGSYILVTNRSQTWMGPAQMITDKIKLFLTYQISAWVKLSVGASSGINPQNV NIALSVDNQWVNGGQVEVSVGETWHELGGSFRLEKQPQNVMVYVQGP | |||
| GH10 | 635 | 918 | 0 |
| VKQTHNSFPVGTCINRTDIDNEDFVDFFIKNFNWAVFGNELKWYWTEAERGKLNYQDADDMLDLCIGNNINVRGHCIFWEVESTVQPWVRQLNKTELMNA VQKRLTDILTRYKGKFKHYDVNNEMLHGSFYQDRLGKGVRALMFNIAHKLDPSALLFVNDYHVEDGDDTRSSPEKYSRLVLELEAQGAPIGGIGIQGHID SPVGAIVSSALDNLSVLGHPIWFTELDVSSRNEFVRGEDLEVMLWEAFAHPAVEGIMLWGFWELSMSRENSNLVEGEGEVNEAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 985 Download |
| MADKKGIKVH ATCRKNYLKS LGDKCIVGEW KTIENFQVSE PGKQFRPTKL MYKISFINQT 60 VIKPNDFQNN DMFLALAEFD FVLSGSLETE FLIDIVGQAI DVGELRILHS NGKKLRKIEF 120 TLRNVSDVCI QCCLWGKIAD EMENHREEAQ FGVVVEDPAL LPECIKEIVG KTFRYGITFD 180 KGGDTKFKVL KVWSVYNTLM VDSQSETMSG KGTTAISGSE FQSTNNRMKD DSGIHSHGQP 240 SRKKKRKQYE DENNPSLTIS QKPNRNLGVV FQDVTNIPQI QAATERKAAW NGIQQEISGR 300 CQRKRVYEVT SVVRIFGNNA TSATVQATLW VLNANQREQY IAIANVQASN KDWVELKGKF 360 LIHGSPSRII LYLEGPPPGT DILVNTLDVK HARRNRPSPP PFYEVCALTI NSALKLAIAR 420 FVVWINPGFG INIVENSEVR DGETQPWFTL GNCKLGVGQG APRTLPPMAR ETLGSHKPLG 480 GSYILVTNRS QTWMGPAQMI TDKIKLFLTY QISAWVKLSV GASSGINPQN VNIALSVDNQ 540 WVNGGQVEVS VGETWHELGG SFRLEKQPQN VMVYVQGPAA GIDLMIAGLQ IFPVDRRERI 600 RCLKKQVDEV RKRDIILKFS GLDESCDLFP YIVKVKQTHN SFPVGTCINR TDIDNEDFVD 660 FFIKNFNWAV FGNELKWYWT EAERGKLNYQ DADDMLDLCI GNNINVRGHC IFWEVESTVQ 720 PWVRQLNKTE LMNAVQKRLT DILTRYKGKF KHYDVNNEML HGSFYQDRLG KGVRALMFNI 780 AHKLDPSALL FVNDYHVEDG DDTRSSPEKY SRLVLELEAQ GAPIGGIGIQ GHIDSPVGAI 840 VSSALDNLSV LGHPIWFTEL DVSSRNEFVR GEDLEVMLWE AFAHPAVEGI MLWGFWELSM 900 SRENSNLVEG EGEVNEAGKR FLDVKQEWLS HAYGIISDES EFIFRGYHGT YAVEVCTPAG 960 IVLKTFVVEK GESPLVLSID LSYL* 1020 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 1.0e-8 | 283 | 380 | 98 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 4.0e-15 | 432 | 580 | 154 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-23 | 673 | 895 | 244 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 6.0e-66 | 675 | 921 | 268 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-75 | 640 | 925 | 306 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC42019.1 | 0 | 282 | 984 | 68 | 752 | putative xylan endohydrolase [Arabidopsis thaliana] |
| RefSeq | NP_001031593.1 | 0 | 282 | 889 | 68 | 657 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_192556.2 | 0 | 282 | 984 | 68 | 752 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1tux_A | 5e-25 | 673 | 863 | 47 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 2e-24 | 665 | 915 | 39 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 2e-24 | 665 | 915 | 39 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 4e-24 | 665 | 915 | 39 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1k6a_A | 7e-24 | 673 | 863 | 47 | 241 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 303 | 460 | 762 | 0 |
| DK523251 | 231 | 755 | 985 | 0 |
| GO850973 | 329 | 562 | 890 | 0 |
| GW865493 | 311 | 534 | 844 | 0 |
| EB442796 | 106 | 284 | 389 | 0.003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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