Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra039852 |
Family | CBM43 |
Protein Properties | Length: 467 Molecular Weight: 49685.3 Isoelectric Point: 4.4549 |
Chromosome | Chromosome/Scaffold: 000178 Start: 244740 End: 247002 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 370 | 448 | 2.5e-30 |
WCVPKEDATEEQLQASLDWVCGQGIDCGPITPGGVCFEPNNVMSHTAYAMNLYFQKSPENPTDCDFSQTARITSNNPSK | |||
GH17 | 26 | 343 | 0 |
IGVNYGLLADNLPSPSDAAKLLQSTSIQKVRLYGADPTIIKSLAGTGVGIVIGVANGDLPSLASDLNVASQWIGTNVLPFYPASDIILINVGNEILLSND LNLVSQLLPAMQNVQKALEAVSLGGKIKVSTVHAMTVLGQSDPPSAGSFAPGYQAGLKGILQFLSETGSPFVINPYPFFAYLGDQRPETLSFCLFQPNPG RVDSNTGIKYMNMFDAQVDAVHSALKSMGFENVEVVVAETGWPTSGDSNVVGPSVENAQTYNGNLIAHLRSMVGTPLRPGKPIDTYIFALFDENLKPGPS FERSFGLFKRDLTMAYDI |
Full Sequence |
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Protein Sequence Length: 467 Download |
MALSILFFSL FLFLFSNSPA DAESFIGVNY GLLADNLPSP SDAAKLLQST SIQKVRLYGA 60 DPTIIKSLAG TGVGIVIGVA NGDLPSLASD LNVASQWIGT NVLPFYPASD IILINVGNEI 120 LLSNDLNLVS QLLPAMQNVQ KALEAVSLGG KIKVSTVHAM TVLGQSDPPS AGSFAPGYQA 180 GLKGILQFLS ETGSPFVINP YPFFAYLGDQ RPETLSFCLF QPNPGRVDSN TGIKYMNMFD 240 AQVDAVHSAL KSMGFENVEV VVAETGWPTS GDSNVVGPSV ENAQTYNGNL IAHLRSMVGT 300 PLRPGKPIDT YIFALFDENL KPGPSFERSF GLFKRDLTMA YDIGLTKTSS SGSQTSQSPP 360 LGKSATSVGW CVPKEDATEE QLQASLDWVC GQGIDCGPIT PGGVCFEPNN VMSHTAYAMN 420 LYFQKSPENP TDCDFSQTAR ITSNNPSKFF SSSFPSSSLL LGITNF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 5.0e-10 | 18 | 336 | 327 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-21 | 370 | 439 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-33 | 370 | 442 | 73 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-100 | 26 | 343 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD22313.1 | 0 | 19 | 453 | 18 | 449 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
GenBank | ABK95331.1 | 0 | 1 | 447 | 1 | 445 | unknown [Populus trichocarpa] |
GenBank | ABK95837.1 | 0 | 1 | 447 | 1 | 441 | unknown [Populus trichocarpa] |
RefSeq | NP_179219.4 | 0 | 19 | 447 | 18 | 443 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_195174.6 | 0 | 1 | 447 | 1 | 441 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 26 | 343 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 26 | 343 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 26 | 343 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 26 | 346 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 26 | 346 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |