| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039998 |
| Family | CBM43 |
| Protein Properties | Length: 115 Molecular Weight: 12437.2 Isoelectric Point: 6.4828 |
| Chromosome | Chromosome/Scaffold: 04 Start: 13292115 End: 13292459 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 28 | 111 | 7.4e-31 |
| WCVASPTSKEKQLEENLGFACANGVDCRPILEGGACYNPNTPLGHASYVMNAYYATHERTDYACKFFFPNSAMLTTTNPSYGSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 115 Download |
| MSPFSTLIVI LVSSIMIHHL PLASSTQWCV ASPTSKEKQL EENLGFACAN GVDCRPILEG 60 GACYNPNTPL GHASYVMNAY YATHERTDYA CKFFFPNSAM LTTTNPSYGS CVYA* 120 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-18 | 27 | 93 | 72 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-36 | 27 | 113 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28052.1 | 9e-35 | 7 | 114 | 10 | 115 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_001078361.1 | 9e-35 | 7 | 114 | 10 | 115 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_001118955.1 | 9e-35 | 7 | 114 | 10 | 115 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_001118956.1 | 1e-33 | 7 | 114 | 10 | 115 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_192648.2 | 1e-33 | 1 | 113 | 4 | 114 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 4e-23 | 28 | 113 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
