| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra040032 |
| Family | GH28 |
| Protein Properties | Length: 397 Molecular Weight: 42180.9 Isoelectric Point: 7.2692 |
| Chromosome | Chromosome/Scaffold: 01 Start: 27850005 End: 27851631 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 44 | 376 | 0 |
| TSACQSPSPSKVVIPKGEFKLGEIEMRGPCKAPVEITLQGTVKADGNAIQGKEKWVVFGNINGFKLNGGGAFDGEGNAAWRVNNCHKTFNCKKLPISIRF DFVENAEIKDISSIDAKNFHINVLGAKNMTMSNIKITAPEDSPNTDGIHLGRSDGVKILDSFISTGDDCISVGDGTSNLHVEKVTCGPGHGISVGSLGRY GKEQDVSGIRVVNCTLQETDNGLRIKTWPSAACSTTASDIHFEDIIVKNVTNPILIDQEYCPWNQCNKKKASTIKLVNISFKNVRGTSGNKDAVKLLCSK GYPCQNVEIGDIDIKYSGEDGPATFQCSNVSPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 397 Download |
| MGAYFGVSTI FILCLLGFSA NAEVFSIGSS SGSDITQALL KAFTSACQSP SPSKVVIPKG 60 EFKLGEIEMR GPCKAPVEIT LQGTVKADGN AIQGKEKWVV FGNINGFKLN GGGAFDGEGN 120 AAWRVNNCHK TFNCKKLPIS IRFDFVENAE IKDISSIDAK NFHINVLGAK NMTMSNIKIT 180 APEDSPNTDG IHLGRSDGVK ILDSFISTGD DCISVGDGTS NLHVEKVTCG PGHGISVGSL 240 GRYGKEQDVS GIRVVNCTLQ ETDNGLRIKT WPSAACSTTA SDIHFEDIIV KNVTNPILID 300 QEYCPWNQCN KKKASTIKLV NISFKNVRGT SGNKDAVKLL CSKGYPCQNV EIGDIDIKYS 360 GEDGPATFQC SNVSPKLLGA QSPEACSSPL TKLPGQ* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 8.0e-78 | 33 | 384 | 359 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 7.0e-80 | 33 | 386 | 357 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-80 | 33 | 396 | 370 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-125 | 33 | 386 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-126 | 47 | 373 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG38468.1 | 0 | 1 | 394 | 1 | 394 | pollen-expressed protein MF9c [Brassica oleracea] |
| GenBank | ABL63521.1 | 0 | 1 | 394 | 1 | 394 | pollen-specific protein MF9l [Brassica oleracea var. alboglabra] |
| GenBank | ABN13878.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CAA05892.1 | 0 | 1 | 389 | 1 | 389 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187439.1 | 0 | 1 | 389 | 1 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000006 | 111 | 376 | 115 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.0000000000001 | 33 | 357 | 34 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.000000000003 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000003 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000003 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
