| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra040035 |
| Family | GH28 |
| Protein Properties | Length: 398 Molecular Weight: 42416.4 Isoelectric Point: 6.7339 |
| Chromosome | Chromosome/Scaffold: 01 Start: 27839118 End: 27840663 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 44 | 376 | 0 |
| TSACQAPAPSQVLIPKGDFKLGETVMTGPCKSPIEFTLQGNVKADGGSTQGKDRWVVFEKINGFKLNGGGTFDGEGNAAWKANNCHKTFECKKLPISVRF DFVDNAEIKDITSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRY GWEQDVTDINVKNCTLEGTDNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNIRGTSGNKDAVKLLCSK GHPCENVEIGDINIDYTGPDGPPTFECTNVTPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 398 Download |
| MGSYLGIYTI LVLCLLGYSA NAEVFTAGGP PNSDITAAVL KAFTSACQAP APSQVLIPKG 60 DFKLGETVMT GPCKSPIEFT LQGNVKADGG STQGKDRWVV FEKINGFKLN GGGTFDGEGN 120 AAWKANNCHK TFECKKLPIS VRFDFVDNAE IKDITSLDAK NFHFNVISGK NMTFDNIKII 180 APAESPNTDG IHLGRCEGVK ILNTKIATGD DCISVGDGMK NLLIEKVVCG PGHGISVGSL 240 GRYGWEQDVT DINVKNCTLE GTDNGLRIKT WPSAACTTTA AGIHFEDIIL NKVSNPILID 300 QEYCPWNQCN KNKPSTIKLV DITFRNIRGT SGNKDAVKLL CSKGHPCENV EIGDINIDYT 360 GPDGPPTFEC TNVTPKLVGT QNPKACVGPV VKAPGKE* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-71 | 25 | 384 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-73 | 25 | 386 | 369 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-79 | 7 | 387 | 390 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-116 | 21 | 386 | 366 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-140 | 47 | 386 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM74219.1 | 0 | 1 | 396 | 1 | 396 | AF518563_1 putative pollen polygalacturonase [Brassica oleracea] |
| GenBank | AAP42648.1 | 0 | 1 | 396 | 1 | 396 | polygalacturonase [Brassica napus] |
| GenBank | ABN13878.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase [Brassica rapa subsp. campestris] |
| RefSeq | NP_187441.1 | 0 | 1 | 396 | 1 | 398 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Swiss-Prot | P35337 | 0 | 1 | 397 | 1 | 397 | PGLR_BRANA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000005 | 111 | 323 | 115 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.0000000000003 | 32 | 357 | 33 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.000000000001 | 37 | 373 | 9 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000001 | 37 | 373 | 9 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000001 | 37 | 373 | 9 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
