| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra040144 |
| Family | GT41 |
| Protein Properties | Length: 976 Molecular Weight: 110077 Isoelectric Point: 7.3638 |
| Chromosome | Chromosome/Scaffold: 01 Start: 28475511 End: 28481085 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT41 | 586 | 743 | 0 |
| GFKRLRIGYMSSDFGNHPLSHLMGSVFGMHNRDNVEVFCYALSPNDGTEWRQRTQSEAEHFLDVSAMSSDAIAKTINEDKIQILINLNGYTKGARNEIFA MQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQ | |||
| GT41 | 752 | 961 | 0 |
| KSKPKRSDYGLPEDKFIFGCFNQLYKMDPEIVNTWCNVLKRVPNSALWLLRFPAAGEMRFRAYAAAQGVHPDQIIFTDVAMKNEHIRRSVLADVILDTPL CNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHEMIVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLERSYFKMWN LHCSGQKPQH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 976 Download |
| MLSSRNGAGM MISRPVFLDE VFTRKLDLSS TSSSSSSLLL NQFNKSHEAD DDARLTLAHQ 60 LYKAGDFKQA LEHSNLVYQR NPLRTDNLLL IGAIYYQLQD YDMCIARNEE ALRIQPQFAE 120 CYGNMANAWK EKGDTDRAIR YYLIAIELKP NYADAWSNLA SAYMRKGRLS EATQCCQQAL 180 SLNPLLVDAH SNLGNLMKAQ GLIQEAYSCY LEAVRIQPTF AIAWSNLAGL FMESGDLNRA 240 LQYYKEAVKL KPAFPDAYFN LGNVYKALGR PTEAIMCYQH AIQARPSFAM AFGNIATIYY 300 EQGQLDLAIR HYKQAISRDP RFLEAYNNLG NALKDIGRVE EAVRCYNHCL HLQPNHPQAM 360 ANLGNIYMEW NMMGPASSLF QATLTVTTGL SAPFNNLALI YKQQGNYTNA ISCYNEVLRI 420 DPLAADALVN RGNTFKEIGR VTEAIQDYMH AITFRPTMAE AHANLASAYK DSGHVEAAIT 480 SYKQALLLRP DFPEATCNLL HTLQCVCCWE DRSKMFTEVE GIIRRQINMS VLPSVQPFHA 540 IAYPIDPILA LEISRKYAAH CSIIASRFGL PPFNHPAGVP VKREGGFKRL RIGYMSSDFG 600 NHPLSHLMGS VFGMHNRDNV EVFCYALSPN DGTEWRQRTQ SEAEHFLDVS AMSSDAIAKT 660 INEDKIQILI NLNGYTKGAR NEIFAMQPAP IQVSYMGFPG TTGATYIDYL VTDEFVSPLQ 720 YAHIYSEKLV HLPHCYFVND YKQKNQDVLD PKSKPKRSDY GLPEDKFIFG CFNQLYKMDP 780 EIVNTWCNVL KRVPNSALWL LRFPAAGEMR FRAYAAAQGV HPDQIIFTDV AMKNEHIRRS 840 VLADVILDTP LCNGHTTGTD VLWAGVPMIT LPLEKMATRV AGSLCLATGL GHEMIVNSLE 900 EYEEKAVSLA LNKPKLQALT KELRASRLTC PLFDTMRWVK NLERSYFKMW NLHCSGQKPQ 960 HFKVVEKDME FPHDR* 1020 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3914 | Spy | 1.0e-101 | 395 | 951 | 568 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_187074.1 | 0 | 1 | 975 | 1 | 977 | SEC (secret agent); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002270163.1 | 0 | 36 | 975 | 46 | 986 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319130.1 | 0 | 50 | 972 | 1 | 923 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002325368.1 | 0 | 103 | 975 | 1 | 873 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522031.1 | 0 | 44 | 975 | 48 | 979 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 0 | 354 | 753 | 6 | 407 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 4gz6_D | 0 | 757 | 966 | 514 | 723 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 4gz6_D | 2e-29 | 116 | 263 | 6 | 153 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 4gz6_D | 7e-28 | 184 | 334 | 6 | 156 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 4gz6_D | 2e-26 | 150 | 296 | 6 | 152 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO795247 | 463 | 514 | 976 | 0 |
| HO778725 | 450 | 527 | 976 | 0 |
| HO798232 | 413 | 46 | 458 | 0 |
| HO798232 | 367 | 124 | 490 | 0 |
| HO795247 | 52 | 464 | 515 | 8e-21 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
