| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra040271 |
| Family | GT31 |
| Protein Properties | Length: 464 Molecular Weight: 52750.6 Isoelectric Point: 8.0947 |
| Chromosome | Chromosome/Scaffold: 01 Start: 28171374 End: 28173072 |
| Description | Galactosyltransferase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT31 | 229 | 413 | 0 |
| KRRMALRRSWMQYEAVRSGEVAVRFLIGLHTNEQVNLEMWREAKAYGDIQFMPFVDYYGLLSLKTVALCILGTKVIPAKYIMKTDDDAFVRIDELLLSLK DKPSSALLYGLISFDSSPDREKGSKWYIRKEEWPLDSYPPWAHGPGYIITQDIAKFVVKGHLERDLRLFKLEDVAIGIWIQQYNQ | |||
| Full Sequence |
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| Protein Sequence Length: 464 Download |
| MVSRRTCPDF VNAADVDLSG SRPVLELPCG LTEDSSITFV GVPDEHSRSF QIHLLGSGVL 60 RYDVNFSKQS IVQNTWTERS GWGEEVRCPC HGSFKNYIVV DELPLCNEQT SRITLDDFPF 120 LKGSPFTATL WFGLEGFHMT VNGRHETSFP YREVKNDSTK SLQKLEPWLV SAVKVSGGLK 180 LLSASATRLP VPDENHSSLA IEEKLKAPSL SGTRITLLVG VFSTGNNFKR RMALRRSWMQ 240 YEAVRSGEVA VRFLIGLHTN EQVNLEMWRE AKAYGDIQFM PFVDYYGLLS LKTVALCILG 300 TKVIPAKYIM KTDDDAFVRI DELLLSLKDK PSSALLYGLI SFDSSPDREK GSKWYIRKEE 360 WPLDSYPPWA HGPGYIITQD IAKFVVKGHL ERDLRLFKLE DVAIGIWIQQ YNQTVKRVKY 420 MNDKRFHNSG CKPNYILVHY QTPRLLLCLW EKLQKESQSV CCE* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00908 | Gal-bind_lectin | 7.0e-20 | 28 | 183 | 160 | + Galactoside-binding lectin. Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction. | ||
| cd00070 | GLECT | 9.0e-24 | 24 | 183 | 163 | + Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation. | ||
| pfam00337 | Gal-bind_lectin | 5.0e-25 | 24 | 183 | 164 | + Galactoside-binding lectin. This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5). | ||
| pfam01762 | Galactosyl_T | 3.0e-36 | 229 | 407 | 186 | + Galactosyltransferase. This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2. | ||
| PLN03133 | PLN03133 | 0 | 7 | 462 | 499 | + beta-1,3-galactosyltransferase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF08572.1 | 0 | 4 | 463 | 118 | 562 | AC011623_5 unknown protein [Arabidopsis thaliana] |
| GenBank | AAQ77230.1 | 0 | 4 | 394 | 146 | 550 | putative beta 1, 3 galactosyltransferase-like protein [Arabidopsis thaliana] |
| GenBank | AAQ77231.1 | 0 | 4 | 463 | 146 | 619 | putative beta 1, 3 galactosyltransferase [Arabidopsis thaliana] |
| RefSeq | NP_001078115.1 | 0 | 4 | 394 | 146 | 550 | galactosyltransferase family protein [Arabidopsis thaliana] |
| RefSeq | NP_566284.1 | 0 | 4 | 463 | 146 | 619 | galactosyltransferase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2wt2_B | 0.0002 | 13 | 160 | 178 | 307 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 2wt2_A | 0.0002 | 13 | 160 | 178 | 307 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 2wt1_A | 0.0002 | 13 | 160 | 178 | 307 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX071802 | 258 | 1 | 258 | 0 |
| EX114991 | 254 | 109 | 362 | 0 |
| FD561390 | 222 | 236 | 457 | 0 |
| GT047837 | 321 | 118 | 438 | 0 |
| EV096961 | 217 | 248 | 464 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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