| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra040320 |
| Family | CE8 |
| Protein Properties | Length: 511 Molecular Weight: 56329.9 Isoelectric Point: 9.6793 |
| Chromosome | Chromosome/Scaffold: 04 Start: 18506603 End: 18508717 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 205 | 495 | 0 |
| NVVVAKDGSGNFRTIKEAINAASGSGRFVIYVKQGVYSENLEIQKDNVMLRGDGKGRTIITGSRSVRGGSTTFKSATVAAVGDGFIARGITFRNTAGANN GQAVALRSGSDLSVFYQCSFEGYQDTLYVHSNRQFYSDCNVYGTVDFIFGNAAAIFQNCNIFARRPPGRTNTITAQGRSYQDQNTGIIIHNSRVTAASDL RPVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWNGNFGLTTLFYGEFHNTGPGASTSSRVTWPGFRVIRSATEALQFTVDSFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 511 Download |
| MAFRVYLLTF VFLCIFLAST VSGYNSKHVK AWCSKTPNPK PCEYFLTHNS DQKPIKSLSE 60 FLKISMKLAL DRAILAKSHA STLGPKCRDT REKAAWEDCL KLYDFTVSKI NKTMDPDTKC 120 SKTDSQTWLS TALTNLDTCK AGFLELGVTD FILPLMSNNV SDLICNTLAI NKVPFNYTPP 180 EKDGFPSWVK PGDRKLLQNS TPRDNVVVAK DGSGNFRTIK EAINAASGSG RFVIYVKQGV 240 YSENLEIQKD NVMLRGDGKG RTIITGSRSV RGGSTTFKSA TVAAVGDGFI ARGITFRNTA 300 GANNGQAVAL RSGSDLSVFY QCSFEGYQDT LYVHSNRQFY SDCNVYGTVD FIFGNAAAIF 360 QNCNIFARRP PGRTNTITAQ GRSYQDQNTG IIIHNSRVTA ASDLRPVLGS TKTYLGRPWR 420 QYSRTVFMKT SLDSLIDPRG WLEWNGNFGL TTLFYGEFHN TGPGASTSSR VTWPGFRVIR 480 SATEALQFTV DSFIAGSSWI PSYVPFTSGL * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 5.0e-158 | 33 | 510 | 508 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02170 | PLN02170 | 4.0e-158 | 5 | 510 | 529 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 5.0e-169 | 11 | 510 | 538 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 205 | 497 | 298 | + Pectinesterase. | ||
| PLN02995 | PLN02995 | 0 | 5 | 510 | 530 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_566038.1 | 0 | 1 | 510 | 2 | 511 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002280446.1 | 0 | 7 | 510 | 2 | 513 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302526.1 | 0 | 1 | 510 | 1 | 514 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320714.1 | 0 | 1 | 510 | 1 | 514 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511679.1 | 0 | 20 | 510 | 19 | 514 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 198 | 510 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 205 | 510 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 4e-31 | 205 | 468 | 5 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 4e-31 | 205 | 468 | 5 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 4e-31 | 205 | 468 | 5 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
