| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra040506 |
| Family | PL1 |
| Protein Properties | Length: 253 Molecular Weight: 29136.9 Isoelectric Point: 7.6811 |
| Chromosome | Chromosome/Scaffold: 01 Start: 28584714 End: 28586460 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 61 | 169 | 1e-22 |
| HYDNSTDVEEMEENASEEEDDIEMISSATNSTRRSLVMLLGAQNDNHADKKMQVTVAFNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQSPTI LSHGNRFIA | |||
| Full Sequence |
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| Protein Sequence Length: 253 Download |
| METARLLVCV ICIASLIPTL RANVAETDEY WVTKANEARR RTLMAYHPDP YQIVDHFHER 60 HYDNSTDVEE MEENASEEED DIEMISSATN STRRSLVMLL GAQNDNHADK KMQVTVAFNH 120 FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQSPTI LSHGNRFIAP PHIQHYREVT 180 KRDSAPESEW KNWNWRSEKD IFMNNAYFRQ SGNPKFMCSH SRQQMIKPKH GVAVSKLTKY 240 AGALDCRVGK PC* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-10 | 97 | 167 | 74 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam04431 | Pec_lyase_N | 4.0e-17 | 23 | 96 | 74 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| pfam00544 | Pec_lyase_C | 6.0e-29 | 97 | 167 | 71 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-31 | 97 | 171 | 75 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM60924.1 | 6.02558e-44 | 1 | 97 | 1 | 103 | putative pectate lyase [Arabidopsis thaliana] |
| GenBank | AAM60924.1 | 0 | 87 | 252 | 310 | 475 | putative pectate lyase [Arabidopsis thaliana] |
| DDBJ | BAD95093.1 | 0 | 87 | 252 | 9 | 174 | pectate lyase like protein [Arabidopsis thaliana] |
| DDBJ | BAH20311.1 | 0 | 87 | 252 | 200 | 365 | AT3G01270 [Arabidopsis thaliana] |
| RefSeq | NP_186776.1 | 0 | 87 | 252 | 310 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 8e-37 | 97 | 244 | 198 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 8e-37 | 97 | 244 | 198 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0001 | 93 | 169 | 163 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.0007 | 98 | 167 | 210 | 287 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jrg_B | 0.0007 | 98 | 167 | 210 | 287 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| Signal Peptide | ||||
|---|---|---|---|---|
| Cleavage Site | ||||
| 22 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX066297 | 162 | 92 | 253 | 0 |
| ES985451 | 162 | 92 | 253 | 0 |
| GR457532 | 162 | 92 | 253 | 0 |
| CN728664 | 162 | 92 | 253 | 0 |
| GR457408 | 162 | 92 | 253 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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