PlantCAZyme

Basic Information
Species	Brassica rapa
Cazyme ID	Bra040532
Family	CE8
Protein Properties	Length: 344 Molecular Weight: 37374.3 Isoelectric Point: 7.8828
Chromosome	Chromosome/Scaffold: 000215 Start: 47532 End: 49163
Description	Plant invertase/pectin methylesterase inhibitor superfamily
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
CE8	3	278	0
FVPKKKNTTFVVHIKAGVYKEYVQVNKSMTHLVFIGDGPDKTIISGSKNYKDGITTYRTATVAIIGDYFIAKNIGFVNTAGAIKHQAVAVRVQSDESIFF NCRFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLPNQACPITAHGRKDARESTGFVFQGCTIAGEPDYLAVKETSKAYLGRPW KEYSRTIIMNTFIPDFIQPQGWQPWLGNFGLDTLFYSEVQNIGPGAALAGRVTWPGIKTLSDEEILSFTPDQYIQG

Full Sequence
Protein Sequence Length: 344 Download
MKFVPKKKNT TFVVHIKAGV YKEYVQVNKS MTHLVFIGDG PDKTIISGSK NYKDGITTYR 60 TATVAIIGDY FIAKNIGFVN TAGAIKHQAV AVRVQSDESI FFNCRFDGYQ DTLYAHSHRQ 120 FYRDCTISGT IDFLFGDAAA VFQNCTLLVR KPLPNQACPI TAHGRKDARE STGFVFQGCT 180 IAGEPDYLAV KETSKAYLGR PWKEYSRTII MNTFIPDFIQ PQGWQPWLGN FGLDTLFYSE 240 VQNIGPGAAL AGRVTWPGIK TLSDEEILSF TPDQYIQGDV WVPGKGVPYT PGLLAADPNA 300 ATTTPSGSAA PDFSSFPDTS GAGSVSPAAA PEGSTKRTMV LTD* 360

Full Sequence

Protein Sequence Length: 344 Download

MKFVPKKKNT TFVVHIKAGV YKEYVQVNKS MTHLVFIGDG PDKTIISGSK NYKDGITTYR    60
TATVAIIGDY FIAKNIGFVN TAGAIKHQAV AVRVQSDESI FFNCRFDGYQ DTLYAHSHRQ    120
FYRDCTISGT IDFLFGDAAA VFQNCTLLVR KPLPNQACPI TAHGRKDARE STGFVFQGCT    180
IAGEPDYLAV KETSKAYLGR PWKEYSRTII MNTFIPDFIQ PQGWQPWLGN FGLDTLFYSE    240
VQNIGPGAAL AGRVTWPGIK TLSDEEILSF TPDQYIQGDV WVPGKGVPYT PGLLAADPNA    300
ATTTPSGSAA PDFSSFPDTS GAGSVSPAAA PEGSTKRTMV LTD*                     360

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN02713	PLN02713	7.0e-123	12	295	284	+ Probable pectinesterase/pectinesterase inhibitor
PLN02745	PLN02745	4.0e-137	1	293	293	+ Putative pectinesterase/pectinesterase inhibitor
PLN02990	PLN02990	1.0e-137	4	290	288	+ Probable pectinesterase/pectinesterase inhibitor
pfam01095	Pectinesterase	1.0e-179	2	279	279	+ Pectinesterase.
PLN02217	PLN02217	0	1	319	319	+ probable pectinesterase/pectinesterase inhibitor

Gene Ontology
GO Term	Description
GO:0005618	cell wall
GO:0030599	pectinesterase activity
GO:0042545	cell wall modification

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
DDBJ	BAC42986.1	0	1	341	273	614	putative pectinesterase [Arabidopsis thaliana]
RefSeq	NP_187212.1	0	1	341	273	614	pectinesterase family protein [Arabidopsis thaliana]
RefSeq	NP_198139.1	0	1	331	270	599	pectinesterase family protein [Arabidopsis thaliana]
RefSeq	XP_002314364.1	0	4	296	279	571	predicted protein [Populus trichocarpa]
RefSeq	XP_002512459.1	0	4	293	290	579	Pectinesterase precursor, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1gq8_A	0	5	293	30	319	A Chain A, Pectin Methylesterase From Carrot
PDB	1xg2_A	0	5	293	26	315	B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein
PDB	3uw0_A	3e-19	1	271	51	353	A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
PDB	1qjv_B	2e-18	9	283	32	339	A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
PDB	1qjv_A	2e-18	9	283	32	339	A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi

Metabolic Pathways
Pathway Name	Reaction	EC	Protein Name
homogalacturonan degradation	RXN-2102	EC-3.1.1.11	pectinesterase

EST Download unfiltered results here

Hit	Length	Start	End	EValue
EX050674	274	8	281	0
GR459701	240	1	240	0
ES268507	247	35	281	0
EV156298	240	1	240	0
EV156644	240	1	240	0

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_019_00179.1	Aquca_017_00134.1	Aquca_017_00135.1	Aquca_020_00598.1	Aquca_012_00160.1
	Aquca_035_00109.1	Aquca_035_00108.1	Aquca_029_00052.1
Arabidopsis lyrata	477851	910790	494979	478002	859154
	320434	353497	486726	483877
Arabidopsis thaliana	AT3G05610.1	AT5G27870.1	AT5G49180.1	AT3G06830.1	AT4G15980.1
	AT4G33230.1	AT2G26450.1	AT2G47030.1	AT2G47040.1	AT3G62170.1
Brachypodium distachyon	Bradi5g23550.1	Bradi4g30980.1	Bradi1g64860.1	Bradi5g12300.1	Bradi1g16780.1
	Bradi1g60380.1
Brassica rapa	Bra039421	Bra036610	Bra009938	Bra040293	Bra029607
	Bra020658	Bra038049	Bra001219	Bra000541	Bra001157
	Bra037013	Bra004481	Bra000438	Bra040474	Bra007665
	Bra014410	Bra003491
Carica papaya	evm.model.supercontig_50.162	evm.model.supercontig_48.111	evm.model.supercontig_82.46	evm.model.supercontig_146.24	evm.model.supercontig_41.94
Capsella rubella	Carubv10015948m	Carubv10003818m	Carubv10027546m	Carubv10015933m	Carubv10007222m
	Carubv10024513m	Carubv10006885m	Carubv10024512m	Carubv10025567m	Carubv10019418m
Citrus clementina	Ciclev10000446m	Ciclev10000436m	Ciclev10000435m	Ciclev10000415m	Ciclev10007819m
	Ciclev10010665m
Citrus sinensis	orange1.1g039111m	orange1.1g035494m
Cucumis sativus	Cucsa.159100.1	Cucsa.181720.1	Cucsa.252880.1	Cucsa.069220.1	Cucsa.374170.1
	Cucsa.374150.1	Cucsa.374190.1
Fragaria vesca	mrna22811.1-v1.0-hybrid	mrna07045.1-v1.0-hybrid	mrna07046.1-v1.0-hybrid	mrna07048.1-v1.0-hybrid	mrna12964.1-v1.0-hybrid
	mrna24568.1-v1.0-hybrid
Glycine max	Glyma15g20460.1	Glyma09g08910.2	Glyma02g01140.1	Glyma10g01180.1	Glyma0248s00220.1
	Glyma07g02790.1	Glyma07g02780.1	Glyma07g03010.1	Glyma07g02750.1	Glyma03g39360.1
	Glyma01g27260.1	Glyma07g37460.1	Glyma17g03170.1	Glyma19g41970.1	Glyma10g29160.1
	Glyma20g38160.3	Glyma20g38160.2	Glyma09g04730.1	Glyma09g04720.1	Glyma17g04960.1
	Glyma13g17550.1	Glyma10g27700.1	Glyma03g38230.2	Glyma02g01130.1	Glyma10g27710.1
	Glyma19g40840.1	Glyma15g16141.1
Gossypium raimondii	Gorai.009G039000.1	Gorai.007G340800.1	Gorai.007G302000.1	Gorai.006G260800.1	Gorai.006G260900.1
	Gorai.006G260600.1	Gorai.006G260700.1	Gorai.004G238800.1	Gorai.008G137200.1	Gorai.004G146900.1
	Gorai.013G218500.1	Gorai.007G098400.1	Gorai.005G257300.1
Linum usitatissimum	Lus10006940	Lus10015211	Lus10031469	Lus10018335	Lus10037489
	Lus10039927	Lus10020909	Lus10027656	Lus10033466	Lus10023775
	Lus10003968	Lus10002976
Malus domestica	MDP0000545023.286.580	MDP0000545023.286.580	MDP0000267129	MDP0000823143	MDP0000785852
	MDP0000193371	MDP0000136674	MDP0000200340	MDP0000686191	MDP0000389664
	MDP0000850802	MDP0000304455.261.433	MDP0000304455.261.433
Manihot esculenta	cassava4.1_025863m	cassava4.1_030825m	cassava4.1_027130m	cassava4.1_027642m	cassava4.1_033112m
	cassava4.1_024664m	cassava4.1_029816m	cassava4.1_029447m	cassava4.1_030418m	cassava4.1_032868m
Medicago truncatula	Medtr7g112590.1	Medtr1g083510.1	Medtr1g083500.1	Medtr1g083470.1	Medtr1g083490.1
	Medtr4g005170.1	Medtr4g005180.1	Medtr1g086190.1	Medtr1g086210.1	Medtr4g124550.1
	Medtr2g044650.1	Medtr7g110440.1	Medtr7g110510.1	Medtr7g110490.1	Medtr7g110560.1
	Medtr7g110420.1	Medtr8g088610.1	Medtr5g083620.1	Medtr5g083590.1
Mimulus guttatus	mgv1a003232m	mgv1a003546m	mgv1a000814m	mgv1a002232m	mgv1a003747m
	mgv1a003776m	mgv1a004121m	mgv1a003434m	mgv1a003444m	mgv1a003726m
	mgv1a003697m	mgv1a012115m	mgv1a027033m
Oryza sativa	LOC_Os04g38560.1	LOC_Os09g26360.1	LOC_Os04g54850.1	LOC_Os03g18860.1	LOC_Os08g34910.1
	LOC_Os03g28090.1	LOC_Os07g49100.1
Panicum virgatum	Pavirv00011682m	Pavirv00013701m	Pavirv00057767m	Pavirv00019846m	Pavirv00022990m
	Pavirv00056855m	Pavirv00035617m	Pavirv00014003m	Pavirv00066510m	Pavirv00001150m
Phaseolus vulgaris	Phvul.007G210400.1	Phvul.003G107300.1	Phvul.005G015000.1	Phvul.005G104100.1	Phvul.006G088200.1
	Phvul.009G250600.1	Phvul.009G222600.1	Phvul.007G198100.1	Phvul.003G126700.1	Phvul.007G198100.2
	Phvul.001G217400.1	Phvul.001G217300.1	Phvul.007G210300.1	Phvul.007G210200.1
Populus trichocarpa	Potri.018G051200.1	Potri.006G134700.1	Potri.T030500.1	Potri.005G022900.1	Potri.013G013400.1
	Potri.001G209000.1	Potri.003G021600.1	Potri.003G021300.1	Potri.001G209200.1
Prunus persica	ppa023802m	ppa003528m	ppa026560m	ppa025631m	ppa024011m
	ppa003441m	ppa023319m	ppa003569m	ppa020185m	ppa003369m
Ricinus communis	29739.m003676	29726.m004083	30128.m008858	29889.m003396	30116.m000390
	30116.m000389
Setaria italica	Si009724m	Si009788m	Si015620m	Si032329m	Si032614m
	Si040154m
Sorghum bicolor	Sb06g018850.1	Sb06g030310.1	Sb01g037900.1	Sb07g022100.1	Sb02g025460.1
	Sb01g033140.1	Sb02g043780.1
Thellungiella halophila	Thhalv10003734m	Thhalv10020314m	Thhalv10003919m	Thhalv10020401m	Thhalv10024582m
	Thhalv10024699m	Thhalv10001934m	Thhalv10001369m	Thhalv10005855m
Vitis vinifera	GSVIVT01035108001	GSVIVT01031165001	GSVIVT01017687001	GSVIVT01028264001	GSVIVT01028265001

CAZyme Information