| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra040562 |
| Family | CE8 |
| Protein Properties | Length: 288 Molecular Weight: 31389.8 Isoelectric Point: 9.2025 |
| Chromosome | Chromosome/Scaffold: 000218 Start: 34342 End: 35292 |
| Description | pectin methylesterase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 2 | 272 | 0 |
| VPKKSLKMFVIYVKAGRYVENVVMDKGKWNVMIYGDGKDKTIIAGGKNFIDGTPTYETATFAIQGKGFIMKDIAIINTSGAAKHQAVAFRSGSDFSVYYQ CSFDGFQDTLYPHSNRQFYRNCDVTGTIDFIFGSAAVVFQDCKIMPRQPLGNQFNTITAQGKKDPNQNSGMSIQRCTISANGNVTAPTYLGRPWKDFSTT VIMETEIGPVVKATGWMSWVNGVDPPASIVYGEYKNTGPGSDVAMRVKWAGYKAVMTADEAAKFTVATLLH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 288 Download |
| MVPKKSLKMF VIYVKAGRYV ENVVMDKGKW NVMIYGDGKD KTIIAGGKNF IDGTPTYETA 60 TFAIQGKGFI MKDIAIINTS GAAKHQAVAF RSGSDFSVYY QCSFDGFQDT LYPHSNRQFY 120 RNCDVTGTID FIFGSAAVVF QDCKIMPRQP LGNQFNTITA QGKKDPNQNS GMSIQRCTIS 180 ANGNVTAPTY LGRPWKDFST TVIMETEIGP VVKATGWMSW VNGVDPPASI VYGEYKNTGP 240 GSDVAMRVKW AGYKAVMTAD EAAKFTVATL LHGGDWIPAT GVTHQLS* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 2.0e-118 | 3 | 284 | 287 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 2.0e-125 | 10 | 282 | 278 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 4.0e-135 | 2 | 285 | 285 | + putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 2.0e-159 | 1 | 273 | 278 | + Pectinesterase. | ||
| PLN02314 | PLN02314 | 0 | 1 | 287 | 287 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65650.1 | 0 | 2 | 287 | 301 | 586 | pectinesterase, putative [Arabidopsis thaliana] |
| EMBL | CAN74214.1 | 0 | 1 | 287 | 1 | 287 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_175787.1 | 0 | 2 | 287 | 301 | 586 | ATPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002304256.1 | 0 | 2 | 285 | 302 | 585 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532945.1 | 0 | 2 | 287 | 302 | 588 | Pectinesterase-3 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 3 | 284 | 26 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 3 | 280 | 30 | 311 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 3e-16 | 10 | 278 | 35 | 339 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 3e-16 | 10 | 278 | 35 | 339 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 3e-16 | 10 | 278 | 35 | 339 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EW722808 | 241 | 48 | 288 | 0 |
| DK550705 | 222 | 67 | 288 | 0 |
| DK574946 | 251 | 38 | 288 | 0 |
| DK522815 | 214 | 75 | 288 | 0 |
| EV035307 | 208 | 81 | 288 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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