Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra040563 |
Family | CE8 |
Protein Properties | Length: 586 Molecular Weight: 63914.7 Isoelectric Point: 9.4725 |
Chromosome | Chromosome/Scaffold: 000218 Start: 42176 End: 44586 |
Description | pectin methylesterase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 275 | 569 | 0 |
ATVAADGSGDFTTVAAAVAAAPEKSNKRYVIHIKAGVYRENVEVSKKKKNIMFLGDGRGKTIITGKRNVVDGSTTFHSATVAAVGERFLARDITFQNTAG PSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCHIAGTVDFIFGNAAAVLQDCVINARRPNSNQKNMVTAQGRSDPNQNTGIVIQNCKIGA TSDLMAVKGSFSTYLGRPWKQYSRTVIMQSDISDVIRPEGWLEWSGDFALDTLTYREYLNRGAGSGTANRVKWKGYQVITNVTEAQQYTAGQFIG |
Full Sequence |
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Protein Sequence Length: 586 Download |
MAPIKDLISK FSDFKNNKKL IISSAVLALV LFSAVVGIAV TKSNQTKNQK IPTLTPTSHA 60 VLKSVCSSTL YPELCFSAVA ATGKKLTSDK DVIEASLNLT TNAVKHNYFA VKKLITKRKG 120 LTAREVTALH DCLEIIDETL DELHVALEDL DQYPKGKSLR KHADDLKTLI SSAITNQGTC 180 LDGFSYDKAD RKLRKALLKG QVHVEHMCSN ALAMIKNMTE TDIANFELKD KSSSTNNRKL 240 KEELTGDLDG EGWPNWLSIG DRRLLQGSTG VNADATVAAD GSGDFTTVAA AVAAAPEKSN 300 KRYVIHIKAG VYRENVEVSK KKKNIMFLGD GRGKTIITGK RNVVDGSTTF HSATVAAVGE 360 RFLARDITFQ NTAGPSKHQA VALRVGSDFS AFYNCDMLAY QDTLYVHSNR QFFVKCHIAG 420 TVDFIFGNAA AVLQDCVINA RRPNSNQKNM VTAQGRSDPN QNTGIVIQNC KIGATSDLMA 480 VKGSFSTYLG RPWKQYSRTV IMQSDISDVI RPEGWLEWSG DFALDTLTYR EYLNRGAGSG 540 TANRVKWKGY QVITNVTEAQ QYTAGQFIGG EGWLGSTGFP FSLSL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 2.0e-166 | 124 | 585 | 464 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 2.0e-172 | 15 | 581 | 570 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 1.0e-175 | 53 | 585 | 536 | + pectinesterase/pectinesterase inhibitor | ||
PLN02313 | PLN02313 | 0 | 1 | 585 | 589 | + Pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 274 | 571 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC50023.1 | 0 | 6 | 585 | 1 | 582 | ATPME2 precursor [Arabidopsis thaliana] |
GenBank | AAC72288.1 | 0 | 53 | 585 | 50 | 592 | putative pectin methylesterase [Arabidopsis thaliana] |
RefSeq | NP_175786.1 | 0 | 1 | 585 | 1 | 587 | ATPME2; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_188048.1 | 0 | 53 | 585 | 50 | 592 | ATPME3; pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002304257.1 | 0 | 58 | 585 | 59 | 579 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 268 | 585 | 2 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 273 | 581 | 3 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-22 | 285 | 569 | 18 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-22 | 285 | 569 | 18 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 3e-22 | 285 | 569 | 18 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |