| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra040790 |
| Family | GH28 |
| Protein Properties | Length: 400 Molecular Weight: 43417.7 Isoelectric Point: 8.8109 |
| Chromosome | Chromosome/Scaffold: 000258 Start: 33020 End: 35626 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 386 | 0 |
| WDAACSSTDAAVIYVPKGRYLVSPVRFSGESCKSLDIVFRIDGTLVGSGDYNFLGREETWFSFERVTGVSVIGGSFDAKGPSLWACKASSNNSCPAGATT ISFVESSRVKVKGLLSLNSQMFHIVINRCRNVKINDIRIVADGKSPNTDGIHVQLSTDVEIRNASIKTGDDCISIGPGTKNLWVERVTCGPGHGISIGSL GKDREEEGVQNVTVKKTVFVGTDNGLRIKSWANPSSGFVQRVRFLESHMFNVKFPLIIDQHYCPHNINCPSQESGVRIKDVIYQGIRGTSATKIAVKLDC SAKAPCTRIRMKDINLRYANEAAQSSCVNVL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 400 Download |
| MEKFQYTIMY AYLLMSTTIF LSLPIQSHAT ILFNVLSFGA KPNGIVDSAT AFAKAWDAAC 60 SSTDAAVIYV PKGRYLVSPV RFSGESCKSL DIVFRIDGTL VGSGDYNFLG REETWFSFER 120 VTGVSVIGGS FDAKGPSLWA CKASSNNSCP AGATTISFVE SSRVKVKGLL SLNSQMFHIV 180 INRCRNVKIN DIRIVADGKS PNTDGIHVQL STDVEIRNAS IKTGDDCISI GPGTKNLWVE 240 RVTCGPGHGI SIGSLGKDRE EEGVQNVTVK KTVFVGTDNG LRIKSWANPS SGFVQRVRFL 300 ESHMFNVKFP LIIDQHYCPH NINCPSQESG VRIKDVIYQG IRGTSATKIA VKLDCSAKAP 360 CTRIRMKDIN LRYANEAAQS SCVNVLGDAL GSVKHQTCF* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-82 | 34 | 384 | 357 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-84 | 60 | 385 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-85 | 32 | 399 | 376 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 6.0e-102 | 25 | 385 | 367 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-128 | 18 | 399 | 383 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28449.1 | 0 | 26 | 399 | 24 | 397 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_176735.1 | 0 | 26 | 399 | 24 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002262690.1 | 0 | 27 | 399 | 26 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 27 | 399 | 26 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 19 | 399 | 8 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 6e-19 | 58 | 385 | 1 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 6e-19 | 58 | 385 | 1 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 6e-19 | 58 | 385 | 1 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 6e-19 | 58 | 385 | 1 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 6e-19 | 58 | 385 | 1 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
