| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra040910 |
| Family | CE8 |
| Protein Properties | Length: 296 Molecular Weight: 32692.1 Isoelectric Point: 8.6416 |
| Chromosome | Chromosome/Scaffold: 000306 Start: 21869 End: 23073 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 2 | 284 | 0 |
| QVNQEGGGDFKTINEAIKSIPIGNTKRVIIKLAPGVYHEKVTVDVGRPFVTLMGKPGAETNLTFDGTASKFGTMESATLIIWAKYFVAANLHVKNTAPMP KAGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDIGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHAVGDGLRVITAHNRQSENQQNGYSFVHCKITGV GTGIYLGRAWMSHPKVVYAYTEMSSVVNPTGWQENRNRENDKTVFYGEYMCTGPGSHKEKRVAHTQDIDKNEANGFLTLGYIK | |||
| Full Sequence |
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| Protein Sequence Length: 296 Download |
| MQVNQEGGGD FKTINEAIKS IPIGNTKRVI IKLAPGVYHE KVTVDVGRPF VTLMGKPGAE 60 TNLTFDGTAS KFGTMESATL IIWAKYFVAA NLHVKNTAPM PKAGTQGQAL AMRINGDKAA 120 FYNCRFYGFQ DTLCDDIGNH FFKDCYIEGT YDFIFGRGAS LYLNTQLHAV GDGLRVITAH 180 NRQSENQQNG YSFVHCKITG VGTGIYLGRA WMSHPKVVYA YTEMSSVVNP TGWQENRNRE 240 NDKTVFYGEY MCTGPGSHKE KRVAHTQDID KNEANGFLTL GYIKGSLWLL PPPAY* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 8.0e-86 | 3 | 291 | 299 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 2.0e-88 | 3 | 294 | 301 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 2.0e-98 | 1 | 289 | 289 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 2.0e-106 | 7 | 291 | 295 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 3 | 295 | 295 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52566.1 | 0 | 8 | 294 | 50 | 337 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
| GenBank | AAM65347.1 | 0 | 8 | 294 | 54 | 341 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_177152.2 | 0 | 8 | 294 | 73 | 360 | PPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_196359.1 | 0 | 3 | 295 | 69 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_196360.1 | 0 | 1 | 295 | 67 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 8e-39 | 3 | 289 | 11 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 1e-38 | 3 | 289 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 7e-21 | 8 | 257 | 41 | 335 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 7e-21 | 8 | 167 | 15 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 7e-21 | 8 | 167 | 15 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CX193362 | 250 | 10 | 259 | 0 |
| EV158776 | 246 | 32 | 277 | 0 |
| GR455191 | 245 | 41 | 285 | 0 |
| GR450849 | 242 | 55 | 296 | 0 |
| EX067282 | 242 | 9 | 250 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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