Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g02720.2 |
Family | GH28 |
Protein Properties | Length: 476 Molecular Weight: 51462.2 Isoelectric Point: 6.5568 |
Chromosome | Chromosome/Scaffold: 1 Start: 1828877 End: 1832625 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 408 | 0 |
ADKGGAQLFVPAGRWLTGSFSLISHLTLSLDKDAVIIGSPDSSNWPVIDPLPSYGRGRELPGERHQSLIFGYNLTDVIITGANGTIDGQGAVWWDWFHNH TLNYTRPHLVELMYSTNVVISNLTFKNSPFWNIHPVYCSQVLVEHLTILAPLDSPNTDGINPDSSTNICIKHCYVRNGDDVIVIKSGWDEYGISFAHPSS NISITNITGETRGGAGIAIGSEMSGGISEVRAERLRIVNSLHGIRIKTAPGRGGYVRNVYIADVSMHNVSMAIRITGNYGEHPDNNYDRNALPMISNITI ENVVGINVGIAGILEGIEGDNFSSICISNVSLSVQS |
Full Sequence |
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Protein Sequence Length: 476 Download |
MRRSASVFRA LLVFTAIVET QWPGVSGIYC KDMASGVYRP HSVTITEFGA VGDGVALNTK 60 AFQNAIFYLN SFADKGGAQL FVPAGRWLTG SFSLISHLTL SLDKDAVIIG SPDSSNWPVI 120 DPLPSYGRGR ELPGERHQSL IFGYNLTDVI ITGANGTIDG QGAVWWDWFH NHTLNYTRPH 180 LVELMYSTNV VISNLTFKNS PFWNIHPVYC SQVLVEHLTI LAPLDSPNTD GINPDSSTNI 240 CIKHCYVRNG DDVIVIKSGW DEYGISFAHP SSNISITNIT GETRGGAGIA IGSEMSGGIS 300 EVRAERLRIV NSLHGIRIKT APGRGGYVRN VYIADVSMHN VSMAIRITGN YGEHPDNNYD 360 RNALPMISNI TIENVVGINV GIAGILEGIE GDNFSSICIS NVSLSVQSMH PWNCSLIQGY 420 SNSVIPESCD QLRTDCGQTP VCYNGGSPSA VRAQAPMHKP STSSLLNSLL KLSSL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-24 | 40 | 377 | 356 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-27 | 34 | 430 | 430 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-30 | 41 | 385 | 354 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-36 | 147 | 377 | 238 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-52 | 43 | 385 | 373 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF99735.1 | 0 | 17 | 475 | 1 | 460 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACN28107.1 | 0 | 1 | 467 | 1 | 467 | unknown [Zea mays] |
RefSeq | NP_001051812.1 | 0 | 1 | 475 | 1 | 476 | Os03g0833800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151479.1 | 0 | 1 | 467 | 1 | 467 | polygalacturonase [Zea mays] |
RefSeq | XP_002463589.1 | 0 | 17 | 475 | 1 | 459 | hypothetical protein SORBIDRAFT_01g002550 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-40 | 41 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-40 | 41 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-40 | 41 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-40 | 41 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-20 | 87 | 408 | 52 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |