Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g04610.1 |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 43944.7 Isoelectric Point: 7.537 |
Chromosome | Chromosome/Scaffold: 1 Start: 3098043 End: 3099266 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 391 | 0 |
WTAACSSSRPAVLLVPKGKTYLLKSITLSGPCKSNLVFMVKGTLAAPRSLSDWSEENRRHWIVLHGINGLTVTGGGTINGNGELWWKNSCKTNKARPCKQ APTALTFHLCSNLTVENLKIVNSQQINMSVEDCSDVQLARLSITAPGTSPNTDGIHITRSKDVQVRDCVIRTGDDCMSIEDGTHNLHVTKVVCGPGHGIS IGSLGDDNSRAEVSGIYIDTVQLYGTTNGARIKTYQGGSGYAKDIVFQNIIMDNVQNPIIIDQNYCDSAKPCKNQESAVEISNVVFKNIRGTTMSKDAIK LDCSNSDSCTDIVLENIDLKMEGGNGETQSTCQNAK |
Full Sequence |
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Protein Sequence Length: 408 Download |
MASIMTKLVC SALIVLFLLS RSNASSVNTS VEFSIDNYGA RGDGKHDDTE ALAKAWTAAC 60 SSSRPAVLLV PKGKTYLLKS ITLSGPCKSN LVFMVKGTLA APRSLSDWSE ENRRHWIVLH 120 GINGLTVTGG GTINGNGELW WKNSCKTNKA RPCKQAPTAL TFHLCSNLTV ENLKIVNSQQ 180 INMSVEDCSD VQLARLSITA PGTSPNTDGI HITRSKDVQV RDCVIRTGDD CMSIEDGTHN 240 LHVTKVVCGP GHGISIGSLG DDNSRAEVSG IYIDTVQLYG TTNGARIKTY QGGSGYAKDI 300 VFQNIIMDNV QNPIIIDQNY CDSAKPCKNQ ESAVEISNVV FKNIRGTTMS KDAIKLDCSN 360 SDSCTDIVLE NIDLKMEGGN GETQSTCQNA KWRKSGNVTP QPCEFKN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-90 | 33 | 407 | 377 | + polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-102 | 9 | 403 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 8.0e-103 | 60 | 391 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-132 | 16 | 403 | 390 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-137 | 19 | 401 | 385 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57279.1 | 0 | 21 | 403 | 41 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
RefSeq | NP_001140231.1 | 0 | 26 | 406 | 57 | 441 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 33 | 403 | 62 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 33 | 406 | 61 | 434 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 33 | 407 | 75 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-25 | 127 | 374 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 2e-21 | 125 | 389 | 74 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 2e-21 | 125 | 389 | 74 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 2e-21 | 125 | 389 | 74 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 3e-20 | 114 | 389 | 56 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |