Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g04630.1 |
Family | GH28 |
Protein Properties | Length: 412 Molecular Weight: 44174 Isoelectric Point: 7.0554 |
Chromosome | Chromosome/Scaffold: 1 Start: 3108431 End: 3109812 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 395 | 0 |
WNAACSSSRPAVLLVPKGKSYLLKSLTLSGPCKSNVAFMVKGTLVAPQSRSDWSEDNRRHWIVLHGVSGLTVTGGGTIDGNGDIWWKNSCKIDKALPCTE APTALTFHMCDNLTVENIRIVDSQQINLSVEDCSDVRLARLSITAPGTSPNTDGIHITRSKDVQVRDCLIKTGDDCMSIEDGTHNLRVSKVVCGPGHGIS IGSLGDDNSRAEVSGIYIDTVQLYGTTNGARVKTYQGGSGYAKDIVFQNIIMDNVQNPIIIDQNYCDSAKPCKNQELAVEISNVVFKNIRGTTVSKDAIQ LNCSNSVSCSDIVLENINLKMEGGEGETESTCQNAR |
Full Sequence |
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Protein Sequence Length: 412 Download |
MAWAMTKLVW SPLLVLLSLS MMSNASSGNG IGSPVVFSVD NYGARGDGKH DDTQALAKAW 60 NAACSSSRPA VLLVPKGKSY LLKSLTLSGP CKSNVAFMVK GTLVAPQSRS DWSEDNRRHW 120 IVLHGVSGLT VTGGGTIDGN GDIWWKNSCK IDKALPCTEA PTALTFHMCD NLTVENIRIV 180 DSQQINLSVE DCSDVRLARL SITAPGTSPN TDGIHITRSK DVQVRDCLIK TGDDCMSIED 240 GTHNLRVSKV VCGPGHGISI GSLGDDNSRA EVSGIYIDTV QLYGTTNGAR VKTYQGGSGY 300 AKDIVFQNII MDNVQNPIII DQNYCDSAKP CKNQELAVEI SNVVFKNIRG TTVSKDAIQL 360 NCSNSVSCSD IVLENINLKM EGGEGETEST CQNARWRKSG NVSPLPCKNK N* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-89 | 30 | 411 | 384 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-92 | 64 | 394 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-96 | 33 | 407 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 4.0e-126 | 36 | 407 | 372 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-131 | 33 | 404 | 374 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57279.1 | 0 | 8 | 407 | 6 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
RefSeq | NP_001140231.1 | 0 | 35 | 410 | 62 | 441 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 36 | 407 | 61 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 36 | 410 | 60 | 434 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 36 | 411 | 74 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 131 | 378 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 4e-19 | 63 | 354 | 14 | 307 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1rmg_A | 6e-18 | 41 | 386 | 25 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 1e-17 | 118 | 393 | 56 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-17 | 118 | 393 | 56 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |