Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g19360.1 |
Family | CE8 |
Protein Properties | Length: 303 Molecular Weight: 32428.8 Isoelectric Point: 9.4522 |
Chromosome | Chromosome/Scaffold: 1 Start: 15479224 End: 15480811 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 39 | 265 | 0 |
IVVDQRGGGDFERVQPAVNAVPDGNREWVRIHVRNGSYCFNGHAPAPNGTDDDLILTALANGIISNGDSRDGDNPTIESATFTVLTDDFAAHDIAFRNTY NAHHKDNARRALAALIGGDRSSFRRCGFYGFQDTLCAYKGRHYFQSCSINGGVDFIFGYGQSIYDGCSVVSNVPPAWGKQAGFVTAHARVDGSRPGGLVF RGGQVLGTGRQYLGRAWNRFATVVFYK |
Full Sequence |
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Protein Sequence Length: 303 Download |
MEAPPCCRAP ALLVSIMLLL LLRLSPTLSA VPVPVSRTIV VDQRGGGDFE RVQPAVNAVP 60 DGNREWVRIH VRNGSYCFNG HAPAPNGTDD DLILTALANG IISNGDSRDG DNPTIESATF 120 TVLTDDFAAH DIAFRNTYNA HHKDNARRAL AALIGGDRSS FRRCGFYGFQ DTLCAYKGRH 180 YFQSCSINGG VDFIFGYGQS IYDGCSVVSN VPPAWGKQAG FVTAHARVDG SRPGGLVFRG 240 GQVLGTGRQY LGRAWNRFAT VVFYKGGKRG KLGMTLGMLL LLRSGVVGSE LRGPGGCHGR 300 RP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 4.0e-38 | 37 | 263 | 247 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 2.0e-38 | 32 | 263 | 236 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 3.0e-45 | 37 | 265 | 237 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 7.0e-48 | 35 | 265 | 236 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 8.0e-54 | 36 | 265 | 238 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC20793.1 | 0 | 36 | 265 | 32 | 275 | pectin methylesterase-like protein [Oryza sativa Japonica Group] |
GenBank | EAZ04973.1 | 0 | 36 | 265 | 34 | 277 | hypothetical protein OsI_27154 [Oryza sativa Indica Group] |
GenBank | EEC82597.1 | 0 | 36 | 265 | 34 | 277 | hypothetical protein OsI_27157 [Oryza sativa Indica Group] |
GenBank | EEE67729.1 | 0 | 36 | 265 | 32 | 275 | hypothetical protein OsJ_25409 [Oryza sativa Japonica Group] |
RefSeq | NP_001060498.1 | 0 | 36 | 265 | 45 | 288 | Os07g0655600 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-22 | 39 | 262 | 9 | 234 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-21 | 40 | 267 | 6 | 238 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.00000000000004 | 10 | 260 | 5 | 274 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.00000000000005 | 46 | 255 | 15 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000000005 | 46 | 255 | 15 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |