| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g21810.1 |
| Family | CE8 |
| Protein Properties | Length: 376 Molecular Weight: 40211.8 Isoelectric Point: 8.8094 |
| Chromosome | Chromosome/Scaffold: 1 Start: 17530643 End: 17533046 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 78 | 369 | 0 |
| IVVSQDGTGHSRTVQGAVDMVPAGNARRVKILIRPGVYREKVTVPITKPFVSLIGMGTGRTVITWNSRASDMDTTGHQVGTFYSASVAVEADYFCASHLT FENSAPAAPPGAVGQQAVALRLSGDKTMLYRCRILGAQDTLFDNIGRHYLYDCDIQGSIDFIFGNARSLYQGCRLHAVATSYGAIAASQRSSATEESGFS FVGCRLTGSGMLYLGRAWGKYARVVYSLCDLSGIVVPQGWSDWGDRARTKTVLFGEYNCKGPGASSRERVPWSRALTYQEALPFLGRDFING | |||
| Full Sequence |
|---|
| Protein Sequence Length: 376 Download |
| MAAAAPGKQH RFFLALFGLM ITLLFAPVAV SGEGFITWED LAIPAMSAAG GARRGLPAGA 60 HWPGSTAAAA GPETETTIVV SQDGTGHSRT VQGAVDMVPA GNARRVKILI RPGVYREKVT 120 VPITKPFVSL IGMGTGRTVI TWNSRASDMD TTGHQVGTFY SASVAVEADY FCASHLTFEN 180 SAPAAPPGAV GQQAVALRLS GDKTMLYRCR ILGAQDTLFD NIGRHYLYDC DIQGSIDFIF 240 GNARSLYQGC RLHAVATSYG AIAASQRSSA TEESGFSFVG CRLTGSGMLY LGRAWGKYAR 300 VVYSLCDLSG IVVPQGWSDW GDRARTKTVL FGEYNCKGPG ASSRERVPWS RALTYQEALP 360 FLGRDFINGE QWLRL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 2.0e-104 | 78 | 374 | 297 | + putative pectinesterase | ||
| PLN02634 | PLN02634 | 1.0e-105 | 78 | 373 | 297 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 7.0e-106 | 78 | 373 | 298 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 3.0e-128 | 78 | 375 | 299 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 2.0e-139 | 78 | 375 | 300 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82420.1 | 0 | 34 | 375 | 32 | 399 | hypothetical protein OsI_26811 [Oryza sativa Indica Group] |
| GenBank | EEE67559.1 | 0 | 34 | 375 | 32 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060235.1 | 0 | 34 | 327 | 32 | 324 | Os07g0607400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002463165.1 | 0 | 35 | 327 | 26 | 314 | hypothetical protein SORBIDRAFT_02g038910 [Sorghum bicolor] |
| RefSeq | XP_002522727.1 | 0 | 13 | 375 | 36 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 77 | 374 | 8 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 8.40779e-45 | 79 | 374 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-19 | 90 | 345 | 46 | 339 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 4e-16 | 89 | 252 | 19 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 4e-16 | 89 | 252 | 19 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
