| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g22147.1 |
| Family | PL1 |
| Protein Properties | Length: 335 Molecular Weight: 37478.5 Isoelectric Point: 6.7297 |
| Chromosome | Chromosome/Scaffold: 1 Start: 17801658 End: 17803202 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 68 | 247 | 0 |
| IVFEVSGTIDLQSYLRVSSYKTIDGRGHRVKLTGKGLQLRDCHHVIVCNLEFEGGRGHDVDGIQIKPNSSNIWIDRCTLADYDDGLIDITRQSTDITVSR CHFSRHDKTMLIGADPTHVGDRCIRVTIHHCFFDCTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVEAQIVSQSNIYQA | |||
| Full Sequence |
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| Protein Sequence Length: 335 Download |
| MEIPRPPETQ MPYGDADCTL RALAARAEGF GCHAIGGLHG ALYYVTSLQD DGCGTLREAC 60 RIKEPLWIVF EVSGTIDLQS YLRVSSYKTI DGRGHRVKLT GKGLQLRDCH HVIVCNLEFE 120 GGRGHDVDGI QIKPNSSNIW IDRCTLADYD DGLIDITRQS TDITVSRCHF SRHDKTMLIG 180 ADPTHVGDRC IRVTIHHCFF DCTRQRHPRL RFGKVHLYNN YTRNWGIYAV CASVEAQIVS 240 QSNIYQAGEK KTVFKYMPEK AGDKEEVAAG WIRSEGDAFL QGAQSCLIDG PGVDTVFRPE 300 HYYDKWTMET ASPALKEVIE LCAGWQPVPR PPDC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 1.0e-40 | 63 | 243 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 4.0e-46 | 36 | 254 | 238 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 2.0e-67 | 82 | 248 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN25563.1 | 0 | 10 | 333 | 39 | 364 | unknown [Zea mays] |
| GenBank | EAY74463.1 | 0 | 11 | 332 | 41 | 362 | hypothetical protein OsI_02351 [Oryza sativa Indica Group] |
| RefSeq | NP_001043284.1 | 0 | 11 | 332 | 41 | 362 | Os01g0546800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001149991.1 | 0 | 10 | 332 | 37 | 361 | LOC100283618 [Zea mays] |
| RefSeq | XP_002442919.1 | 0 | 11 | 333 | 40 | 364 | hypothetical protein SORBIDRAFT_08g004905 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1.99965e-42 | 23 | 283 | 21 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1.99965e-42 | 23 | 283 | 21 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-28 | 35 | 247 | 22 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 9e-24 | 82 | 245 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 1e-22 | 36 | 325 | 16 | 352 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG177860 | 304 | 28 | 331 | 0 |
| DY275282 | 323 | 11 | 333 | 0 |
| DW066041 | 298 | 34 | 331 | 0 |
| DY277275 | 310 | 11 | 320 | 0 |
| CX546286 | 292 | 16 | 307 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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