| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g26287.1 |
| Family | GH33 |
| Protein Properties | Length: 338 Molecular Weight: 37888.1 Isoelectric Point: 6.5238 |
| Chromosome | Chromosome/Scaffold: 1 Start: 21342816 End: 21345776 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH33 | 29 | 321 | 7.9e-30 |
| PAGTAPFNSCHASTIVEVEKDNFLVAYFGGSKEGAPDVKIWLQRYGDGYWHPPKVADEQDEVPMWNPVLFKLPSRELLLFYKIGQEVQKWSGAMKRSLDG GISWSQREQLPAGILGPIKNKPFLLEDGRLLCGSSVESWNSWGAWLEVTKDAGRTWRKYGPIYVEGETLGVIQPVPYQTANGTIRVLLRSFETIGRVCMA DSIDGGVTWSYVHKTELPNPNSGIDGVKMKDGRVLLAYNTFSRGTLKIAISTDDGDSWKEVMTLEDTKGMEFSYPAVIQTMDELVHITYTYNR | |||
| Full Sequence |
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| Protein Sequence Length: 338 Download |
| MEDSTHNTTN STASKMSGWI ILKEELTFPA GTAPFNSCHA STIVEVEKDN FLVAYFGGSK 60 EGAPDVKIWL QRYGDGYWHP PKVADEQDEV PMWNPVLFKL PSRELLLFYK IGQEVQKWSG 120 AMKRSLDGGI SWSQREQLPA GILGPIKNKP FLLEDGRLLC GSSVESWNSW GAWLEVTKDA 180 GRTWRKYGPI YVEGETLGVI QPVPYQTANG TIRVLLRSFE TIGRVCMADS IDGGVTWSYV 240 HKTELPNPNS GIDGVKMKDG RVLLAYNTFS RGTLKIAIST DDGDSWKEVM TLEDTKGMEF 300 SYPAVIQTMD ELVHITYTYN RTQIKHVVLQ PSRIRRL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 7.0e-6 | 56 | 289 | 274 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 1.0e-33 | 34 | 337 | 359 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 2.0e-95 | 49 | 315 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82140.1 | 0 | 1 | 325 | 88 | 412 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEC82140.1 | 0 | 45 | 334 | 421 | 684 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEE67268.1 | 0 | 1 | 325 | 588 | 912 | hypothetical protein OsJ_24447 [Oryza sativa Japonica Group] |
| GenBank | EEE67268.1 | 0 | 45 | 334 | 921 | 1184 | hypothetical protein OsJ_24447 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059779.1 | 0 | 1 | 332 | 88 | 419 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jkb_A | 0.009 | 121 | 256 | 449 | 574 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fq4_A | 0.009 | 121 | 256 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpy_A | 0.009 | 121 | 256 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpo_B | 0.009 | 121 | 256 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpl_A | 0.009 | 121 | 256 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FF344386 | 262 | 61 | 322 | 0 |
| EL689016 | 287 | 30 | 316 | 0 |
| FF595784 | 234 | 30 | 263 | 0 |
| EY114510 | 262 | 17 | 278 | 0 |
| CJ960179 | 218 | 115 | 332 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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