Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g29880.1 |
Family | GH19 |
Protein Properties | Length: 253 Molecular Weight: 27310.6 Isoelectric Point: 8.4612 |
Chromosome | Chromosome/Scaffold: 1 Start: 25383625 End: 25384464 |
Description | basic chitinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 11 | 245 | 0 |
VSSIVSRSLFDRMLLHRNEGACQAKGFYTYDAFIAAANSFRGFGTTGNADVRKREVAAFLAQTSHETTGGWATAPDGAYAWGYCFKQERGVTSDFCTPSA QWPCVPGKRYYGRGPIHLSHNYNYGPAGKAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSAHAVATGQWKPSAADRTAGRVPGFGVITNIVNGG VECGHGQDIRVADRIGFYKRYCDILGVSYGDSLDC |
Full Sequence |
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Protein Sequence Length: 253 Download |
MAATAHGEES VSSIVSRSLF DRMLLHRNEG ACQAKGFYTY DAFIAAANSF RGFGTTGNAD 60 VRKREVAAFL AQTSHETTGG WATAPDGAYA WGYCFKQERG VTSDFCTPSA QWPCVPGKRY 120 YGRGPIHLSH NYNYGPAGKA IGVDLLRNPD LVATDPTVSF KTALWFWMTA QAPKPSAHAV 180 ATGQWKPSAA DRTAGRVPGF GVITNIVNGG VECGHGQDIR VADRIGFYKR YCDILGVSYG 240 DSLDCYNQRP FA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3179 | COG3179 | 3.0e-10 | 61 | 222 | 182 | + Predicted chitinase [General function prediction only] | ||
cd00442 | lysozyme_like | 3.0e-23 | 67 | 206 | 140 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
cd00325 | chitinase_glyco_hydro_19 | 4.0e-145 | 15 | 245 | 231 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
pfam00182 | Glyco_hydro_19 | 2.0e-155 | 14 | 245 | 232 | + Chitinase class I. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PRF/SEQDB | 0 | 7 | 252 | 57 | 302 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
GenBank | AAX83262.1 | 0 | 10 | 252 | 24 | 266 | class II chitinase [Triticum aestivum] |
GenBank | AAX83263.1 | 0 | 10 | 252 | 24 | 266 | class II chitinase [Triticum aestivum] |
Swiss-Prot | Q9FRV0 | 0 | 4 | 252 | 20 | 266 | CHIC_SECCE RecName: Full=Basic endochitinase C; AltName: Full=Rye seed chitinase-c; Short=RSC-c; Flags: Precursor |
Swiss-Prot | Q9FRV1 | 0 | 7 | 252 | 76 | 321 | CHIA_SECCE RecName: Full=Basic endochitinase A; AltName: Full=Rye seed chitinase-a; Short=RSC-a; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dyg_B | 0 | 10 | 252 | 2 | 244 | A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly |
PDB | 4dyg_A | 0 | 10 | 252 | 2 | 244 | A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly |
PDB | 4dwx_B | 0 | 10 | 252 | 2 | 244 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 4dwx_A | 0 | 10 | 252 | 2 | 244 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 1cns_B | 0 | 10 | 252 | 1 | 243 | A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CK209921 | 244 | 10 | 253 | 0 |
BG365536 | 241 | 10 | 250 | 0 |
CK161245 | 246 | 4 | 249 | 0 |
CK161231 | 250 | 4 | 253 | 0 |
CD908233 | 225 | 16 | 240 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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