y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g36100.1 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 42715 Isoelectric Point: 8.5505 |
Chromosome | Chromosome/Scaffold: 1 Start: 31781773 End: 31783274 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 391 | 0 |
KACAAPGRPAVVVPKGEYRLHPVVFRGPCKGYMELRLAGVLRAPDDLAAFRGSHEWVNFAGIDGLLVTGGGTFDGRGASSWHLNDCPRKPDCTPLPVSIK LGRVRNVTITEVTSLDSKFFHVIIIGSQDVAIHRVTIRAPRDSPNTDGVHIQGSSNVRITDTAVATGDDCVSVGPGSADITVSGVSCGPGHGISVGSLGR HPGEEDVRGLRVSNCTLAGTANGVRIKTWRGGLRPAAGVSGLVFEDIVMRKVRNPIIIDQEYCPYSSSSCRHESALLPSVVKISDVKFKNIRGVSATQVA VKLSCSGASPCHGLELRDIDLRYVKRGVATESRCANVAG |
Full Sequence |
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Protein Sequence Length: 405 Download |
MAFPLVALLF LVTARWCLEV AHAGRQVFDV TDFGAVADGQ TDDSKAFLRA WMKACAAPGR 60 PAVVVPKGEY RLHPVVFRGP CKGYMELRLA GVLRAPDDLA AFRGSHEWVN FAGIDGLLVT 120 GGGTFDGRGA SSWHLNDCPR KPDCTPLPVS IKLGRVRNVT ITEVTSLDSK FFHVIIIGSQ 180 DVAIHRVTIR APRDSPNTDG VHIQGSSNVR ITDTAVATGD DCVSVGPGSA DITVSGVSCG 240 PGHGISVGSL GRHPGEEDVR GLRVSNCTLA GTANGVRIKT WRGGLRPAAG VSGLVFEDIV 300 MRKVRNPIII DQEYCPYSSS SCRHESALLP SVVKISDVKF KNIRGVSATQ VAVKLSCSGA 360 SPCHGLELRD IDLRYVKRGV ATESRCANVA GGVAGGTLVP PSCI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-91 | 26 | 391 | 374 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-96 | 25 | 403 | 384 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 6.0e-99 | 1 | 404 | 405 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-100 | 55 | 389 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-143 | 3 | 403 | 401 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN85236.1 | 0 | 10 | 404 | 12 | 412 | polygalacturonase precursor [Oryza minuta] |
GenBank | ACN85327.1 | 0 | 5 | 404 | 6 | 405 | polygalacturonase precursor [Oryza brachyantha] |
GenBank | EAZ37619.1 | 0 | 23 | 404 | 22 | 415 | hypothetical protein OsJ_21954 [Oryza sativa Japonica Group] |
RefSeq | NP_001058060.1 | 0 | 10 | 404 | 12 | 419 | Os06g0611400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437276.1 | 0 | 16 | 404 | 21 | 404 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 119 | 373 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000001 | 104 | 394 | 54 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 104 | 394 | 54 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000001 | 104 | 394 | 54 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000001 | 104 | 394 | 54 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |