| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g36110.1 |
| Family | GH28 |
| Protein Properties | Length: 413 Molecular Weight: 43239.5 Isoelectric Point: 7.9887 |
| Chromosome | Chromosome/Scaffold: 1 Start: 31785568 End: 31787150 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 67 | 400 | 0 |
| ASACGGTGKQTILIPKGDFLTGPLNFTGPCTGDITIQVDGNLLGSNDLAKYKANWIEIMRVKNLVITGKGKLDGQGPAVWGKNSCAKNYNCKILPNTLVL DFCNNTLIEGITLLNSKFFHLNIYECRGITVKDVTITSPGDSPNTDGIHMGDASNITITDTKIGTGDDCISIGPGTSGVNISGVNCGPGHGISVGSLGRY KDEKDVTDITVKNCVLNKSTNGVRIKSYEDAKSPLVASKLTYENIKMMDVGYPIIIDQKYCPNKICPPKPNSAKVTVKDVTFRNITGTSSTPEAVSLLCS DKQPCSGVQMFDVKVEYSGTNNKTMAVCTNAKVT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 413 Download |
| MAFRNDAIRA FFLLMVVSAA YAKAAEKEAA GSAAAASGPG ATLDIVKLGA TGDGKTDSTK 60 AVEEAWASAC GGTGKQTILI PKGDFLTGPL NFTGPCTGDI TIQVDGNLLG SNDLAKYKAN 120 WIEIMRVKNL VITGKGKLDG QGPAVWGKNS CAKNYNCKIL PNTLVLDFCN NTLIEGITLL 180 NSKFFHLNIY ECRGITVKDV TITSPGDSPN TDGIHMGDAS NITITDTKIG TGDDCISIGP 240 GTSGVNISGV NCGPGHGISV GSLGRYKDEK DVTDITVKNC VLNKSTNGVR IKSYEDAKSP 300 LVASKLTYEN IKMMDVGYPI IIDQKYCPNK ICPPKPNSAK VTVKDVTFRN ITGTSSTPEA 360 VSLLCSDKQP CSGVQMFDVK VEYSGTNNKT MAVCTNAKVT AKGCSEALAC AA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 6.0e-69 | 43 | 410 | 372 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-71 | 42 | 403 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-75 | 49 | 410 | 369 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-104 | 70 | 401 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-112 | 42 | 403 | 364 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN85300.1 | 0 | 1 | 410 | 1 | 412 | exopolygalacturonase precursor [Oryza coarctata] |
| EMBL | CAB42886.1 | 0 | 35 | 412 | 16 | 394 | polygalacturonase [Phleum pratense] |
| GenBank | EAZ01276.1 | 0 | 8 | 410 | 4 | 412 | hypothetical protein OsI_23299 [Oryza sativa Indica Group] |
| RefSeq | NP_001057815.1 | 0 | 8 | 410 | 4 | 411 | Os06g0545400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437275.1 | 0 | 1 | 410 | 1 | 409 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-21 | 121 | 347 | 102 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-18 | 138 | 367 | 80 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-18 | 138 | 367 | 80 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-18 | 138 | 367 | 80 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-18 | 138 | 367 | 80 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
