Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g37280.1 |
Family | PL1 |
Protein Properties | Length: 449 Molecular Weight: 49791.7 Isoelectric Point: 9.1003 |
Chromosome | Chromosome/Scaffold: 1 Start: 33081891 End: 33083321 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 161 | 367 | 0 |
VIQAEPLWIIFARSMLIKLKEELLIGSDKTIDGRGAQVRIADGAQVTVQYAHNVIIHNIHINDLIVGKGGMIRDSPAHFGFRTQSDGDGVNVFGSTSVWL DHLSLATCQDGLIDVIAESTGVTISNCHLTNHNDVMLFGSSDSNPKDVIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKDPTILS QGNRYIA |
Full Sequence |
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Protein Sequence Length: 449 Download |
MEGFQWGRRA GSFVLYVVFF FLSASAPVSQ ANIGDFDEHW QQRKAAARAA AEAIYQSDPL 60 EVANSLNRAV HRATKEDDAG TRRSMLGKHK KFAGPCRATN PIDRCWRCRK DWATDRKRLA 120 RCAQGFGRNA TGGLAGKFYI VTDGSDDDVL APRPGTLRWA VIQAEPLWII FARSMLIKLK 180 EELLIGSDKT IDGRGAQVRI ADGAQVTVQY AHNVIIHNIH INDLIVGKGG MIRDSPAHFG 240 FRTQSDGDGV NVFGSTSVWL DHLSLATCQD GLIDVIAEST GVTISNCHLT NHNDVMLFGS 300 SDSNPKDVIM QITVAFNHFG RGLVQRMPRC RWGFFHVVNN DYTHWLMYAI GGSKDPTILS 360 QGNRYIAPPN LAAKQITKQI GAAEPEWKNW VWHSQEDLLM NGAFFTETGG DIKRKFDKDD 420 LIKPKPGTYV TRLTRYAGCI PCRPGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 7.0e-12 | 32 | 85 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 3.0e-20 | 180 | 363 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-56 | 180 | 365 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-63 | 175 | 369 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF87417.1 | 0 | 31 | 448 | 31 | 444 | unknown [Zea mays] |
RefSeq | NP_001057945.1 | 0 | 28 | 448 | 30 | 448 | Os06g0583900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150723.1 | 0 | 1 | 448 | 2 | 451 | pectate lyase [Zea mays] |
RefSeq | XP_002437204.1 | 0 | 2 | 448 | 4 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
RefSeq | XP_002453531.1 | 0 | 31 | 448 | 32 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 100 | 440 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 100 | 440 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-20 | 169 | 356 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000007 | 178 | 380 | 78 | 301 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000007 | 178 | 380 | 78 | 301 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |