Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g40990.1 |
Family | GH28 |
Protein Properties | Length: 428 Molecular Weight: 44713 Isoelectric Point: 6.2541 |
Chromosome | Chromosome/Scaffold: 1 Start: 37504447 End: 37505845 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 84 | 416 | 0 |
ASACKGTGKQTIQIPKGDYLTGPLNFTGPCTGDVTIQLDGNLLGSTDMALYKSNWIEIMRVENLVISGKGTLDGQGPKVWSKNACAKKYDCKILPNSLVL DFITNGTISGITLLNAKFFHMNVFQCKGVTIEDVTVTAPGDSPNTDGIHIGDSSGITITGTTIGVGDDCISIGPGSTKINITGVTCGPGHGISIGSLGRY KDEKDVTDINVKDCTLKKATNGLRIKSYQSAESSLTASEIHYENVNMEDVANPIIIDMNYCPNKICPAKGSSHVTIKDVTFKNITGTSSTPEAVSLLCSD KLPCSGVELNDVKVEYSGKNNKTMAVCKNAKGT |
Full Sequence |
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Protein Sequence Length: 428 Download |
MALSGNAIRV LFILVILCVA AHGKAAEKKE KKEEKGGKDK EADAEGPAAE GPSSGGGELD 60 ISKSGKCKGD GKADCTEALE EAWASACKGT GKQTIQIPKG DYLTGPLNFT GPCTGDVTIQ 120 LDGNLLGSTD MALYKSNWIE IMRVENLVIS GKGTLDGQGP KVWSKNACAK KYDCKILPNS 180 LVLDFITNGT ISGITLLNAK FFHMNVFQCK GVTIEDVTVT APGDSPNTDG IHIGDSSGIT 240 ITGTTIGVGD DCISIGPGST KINITGVTCG PGHGISIGSL GRYKDEKDVT DINVKDCTLK 300 KATNGLRIKS YQSAESSLTA SEIHYENVNM EDVANPIIID MNYCPNKICP AKGSSHVTIK 360 DVTFKNITGT SSTPEAVSLL CSDKLPCSGV ELNDVKVEYS GKNNKTMAVC KNAKGTAKGC 420 LEALACL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-64 | 68 | 427 | 364 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-68 | 68 | 419 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-70 | 68 | 427 | 367 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-105 | 63 | 414 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-107 | 87 | 417 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001105432.1 | 0 | 1 | 427 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
RefSeq | NP_001105862.1 | 0 | 1 | 427 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
Swiss-Prot | P35338 | 0 | 1 | 427 | 1 | 410 | PGLR2_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
RefSeq | XP_002437275.1 | 0 | 1 | 427 | 1 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
RefSeq | XP_002438528.1 | 0 | 1 | 427 | 1 | 422 | hypothetical protein SORBIDRAFT_10g021590 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-22 | 155 | 410 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-22 | 155 | 410 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-22 | 155 | 410 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-22 | 155 | 410 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-22 | 155 | 410 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |