Basic Information | |
---|---|
Species | Brachypodium distachyon |
Cazyme ID | Bradi1g51310.1 |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 51346.2 Isoelectric Point: 7.929 |
Chromosome | Chromosome/Scaffold: 1 Start: 49753271 End: 49754686 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 107 | 460 | 0 |
ASVCSSSTPATLIVPKEKTFLLKQTVFSGRCNSTVTFKLDGKLVAPATRSESDWGKGNNRRWIMFSKVDGLTVTGDGTIDGSGEIWWKKSCRVDKNLPCT GAPTALLLYKCNNLTVENIRLLNSQQMHMSVEDCKDVVLKRVRITAPGDSPNTDGIHIARTKDIQVIDCDIGTGDDCMSIETGTENLYASGVTCGPGHGI SIGSLGDDNSEARVSNITIYKARLTGTTNGARIKSWQGGRGYARDITYEDMVMEDVKNPIILDQNYCTMADPLRPKPCEKQDSAVEFSGIRFKNIRGTSA TKQAIKLDCSDAVPCHDILLQDVKLTFNGRPQRHRGRSAHRSTTTSLCNNVQLQ |
Full Sequence |
---|
Protein Sequence Length: 472 Download |
MASRALVLLA AVIIAFLLLL SPAYAARPAD RHSKPEAAHH RKFGQKTWTQ FGQHRAAAGH 60 RKLGQIETTE LPSPEISTDQ VQVDVVSHGA VGDGESDDTP AFMEAWASVC SSSTPATLIV 120 PKEKTFLLKQ TVFSGRCNST VTFKLDGKLV APATRSESDW GKGNNRRWIM FSKVDGLTVT 180 GDGTIDGSGE IWWKKSCRVD KNLPCTGAPT ALLLYKCNNL TVENIRLLNS QQMHMSVEDC 240 KDVVLKRVRI TAPGDSPNTD GIHIARTKDI QVIDCDIGTG DDCMSIETGT ENLYASGVTC 300 GPGHGISIGS LGDDNSEARV SNITIYKARL TGTTNGARIK SWQGGRGYAR DITYEDMVME 360 DVKNPIILDQ NYCTMADPLR PKPCEKQDSA VEFSGIRFKN IRGTSATKQA IKLDCSDAVP 420 CHDILLQDVK LTFNGRPQRH RGRSAHRSTT TSLCNNVQLQ TLDNVDPKIA C* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 9.0e-100 | 75 | 431 | 359 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-101 | 83 | 468 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-114 | 110 | 457 | 348 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-122 | 89 | 467 | 380 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-124 | 83 | 431 | 351 | + polygalacturonase ADPG |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57273.1 | 0 | 71 | 435 | 41 | 398 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 75 | 435 | 45 | 398 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAZ03178.1 | 0 | 76 | 454 | 46 | 413 | hypothetical protein OsI_25331 [Oryza sativa Indica Group] |
GenBank | EAZ39077.1 | 0 | 76 | 435 | 46 | 398 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 75 | 435 | 45 | 398 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-26 | 179 | 432 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-20 | 84 | 448 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 2e-19 | 177 | 432 | 97 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-19 | 177 | 432 | 97 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 9e-17 | 177 | 383 | 74 | 282 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |