Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g52050.1 |
Family | GH28 |
Protein Properties | Length: 489 Molecular Weight: 51862.8 Isoelectric Point: 6.769 |
Chromosome | Chromosome/Scaffold: 1 Start: 50451651 End: 50454051 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 83 | 429 | 0 |
GGGGMLYVPAGRWLTAPFNLTSHFTLFLHSDAVILASQNISEWPVIAPLPSYGRGRDHAGGRYTSLISGSNLTDVVITGNNGTIDGQGATWWSKYKSGKL KYTRGYLIELMSSDTIFISNVTLLNSPAWNIHPVYSKNIVIQGVTILAPTRSPNTDGINPDSCSQVRIEDCYVVSGDDCVAIKSGWDEYGIAAGIPTEHV IVRRLTCVSPTSALVAIGSEMSGGVRDVRIEDVAAVDTESAVRIKTAVGRGAYVKDIYARRMTLTGMKRVFWMTGDYKSHPDDGYDKTAVPVVEGVSFQD VAATGVWKEAARMEGISGAPFKGICMANVTMEMTKPRKVMWNCADVE |
Full Sequence |
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Protein Sequence Length: 489 Download |
MARQQQILCS LFVVFLVLGA PAAAARRHAP AAAGEQSAYL APACREHTAS LAEFGGVGDG 60 TTSNTAAFRA AVEHLSQYSG DGGGGGMLYV PAGRWLTAPF NLTSHFTLFL HSDAVILASQ 120 NISEWPVIAP LPSYGRGRDH AGGRYTSLIS GSNLTDVVIT GNNGTIDGQG ATWWSKYKSG 180 KLKYTRGYLI ELMSSDTIFI SNVTLLNSPA WNIHPVYSKN IVIQGVTILA PTRSPNTDGI 240 NPDSCSQVRI EDCYVVSGDD CVAIKSGWDE YGIAAGIPTE HVIVRRLTCV SPTSALVAIG 300 SEMSGGVRDV RIEDVAAVDT ESAVRIKTAV GRGAYVKDIY ARRMTLTGMK RVFWMTGDYK 360 SHPDDGYDKT AVPVVEGVSF QDVAATGVWK EAARMEGISG APFKGICMAN VTMEMTKPRK 420 VMWNCADVEG VSTGVTPAPC GQLQQKQDGA GGSDCPFPTD KLAVDEVTVQ QCTYSLPKAA 480 TVAARTTN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-20 | 51 | 487 | 454 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-20 | 48 | 414 | 374 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 1.0e-21 | 53 | 433 | 391 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-29 | 149 | 440 | 297 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-52 | 34 | 411 | 417 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG41831.1 | 0 | 39 | 477 | 2 | 436 | glycoside hydrolase, family 28 [Zea mays] |
DDBJ | BAD67712.1 | 0 | 2 | 479 | 11 | 484 | putative polygalacturonase [Oryza sativa Japonica Group] |
RefSeq | NP_001151164.1 | 0 | 24 | 477 | 32 | 483 | glycoside hydrolase, family 28 [Zea mays] |
RefSeq | XP_002437680.1 | 0 | 6 | 477 | 15 | 485 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
RefSeq | XP_002509850.1 | 0 | 39 | 475 | 43 | 476 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 42 | 417 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 42 | 417 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 42 | 417 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 42 | 417 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000001 | 95 | 385 | 52 | 335 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |