Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g53430.3 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 43286.9 Isoelectric Point: 6.2282 |
Chromosome | Chromosome/Scaffold: 1 Start: 51777762 End: 51781109 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 328 | 0 |
ELPGKRHQSLIFGSNLTDVIITGANGTIDGQGEIWWNWFHNHTLNYTRPPLVEFMYSTRVVVSNLTFTNSPFWNIHPVYCSQVLVQHLTILAPISSPNTD GIDPDSSTNVCIEDCYIRNGDDIVVIKSGWDEYGISFAYPSSNISIQNITGQTRSSAGIALGSEMSGGISNVRAVGIRIVNSVHGIRIKTAPGRGGYVKN VYIADVSMDNVSIAIRITANYGEHPDDKYDKNALPIISNITIKNVIGANIGVAGMLQGIQGDSFSNICLSNVTLSTKSMD |
Full Sequence |
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Protein Sequence Length: 397 Download |
MEQLKYVLKQ TVQGLLHCYC YGIFNKVCLQ DSSDWPVIDP LPSYGRGREL PGKRHQSLIF 60 GSNLTDVIIT GANGTIDGQG EIWWNWFHNH TLNYTRPPLV EFMYSTRVVV SNLTFTNSPF 120 WNIHPVYCSQ VLVQHLTILA PISSPNTDGI DPDSSTNVCI EDCYIRNGDD IVVIKSGWDE 180 YGISFAYPSS NISIQNITGQ TRSSAGIALG SEMSGGISNV RAVGIRIVNS VHGIRIKTAP 240 GRGGYVKNVY IADVSMDNVS IAIRITANYG EHPDDKYDKN ALPIISNITI KNVIGANIGV 300 AGMLQGIQGD SFSNICLSNV TLSTKSMDPW NCSLVEGYSN SVSPEICEEL RTNPGPDQVC 360 YDGNYLASAE VPSQAPQKSS ASRLLNPFHK LASVRA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-20 | 71 | 298 | 235 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-21 | 52 | 269 | 226 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-27 | 52 | 297 | 252 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 8.0e-31 | 59 | 333 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-35 | 57 | 273 | 225 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR35653.1 | 0 | 31 | 392 | 123 | 485 | unknown [Zea mays] |
GenBank | EEC81792.1 | 0 | 30 | 394 | 142 | 504 | hypothetical protein OsI_25505 [Oryza sativa Indica Group] |
GenBank | EEE66877.1 | 0 | 30 | 394 | 142 | 504 | hypothetical protein OsJ_23693 [Oryza sativa Japonica Group] |
RefSeq | NP_001059282.1 | 0 | 30 | 394 | 82 | 444 | Os07g0245200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459610.1 | 0 | 31 | 392 | 130 | 494 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-35 | 55 | 323 | 113 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-35 | 55 | 323 | 113 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-35 | 55 | 323 | 113 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-35 | 55 | 323 | 113 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-17 | 74 | 326 | 117 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO799706 | 301 | 86 | 385 | 0 |
EB668408 | 273 | 31 | 303 | 0 |
GO865721 | 249 | 31 | 279 | 0 |
GO869818 | 274 | 120 | 392 | 0 |
GT807871 | 221 | 170 | 390 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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