| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g56880.1 |
| Family | AA4 |
| Protein Properties | Length: 557 Molecular Weight: 60436.8 Isoelectric Point: 6.6109 |
| Chromosome | Chromosome/Scaffold: 1 Start: 55515767 End: 55523360 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA4 | 97 | 321 | 7.1e-26 |
| REFVDELASFLGEKLTVDYDERSFHGTPQNSFHKAVNVPDVVVFPSSQDEVQQIVVTCNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSSMKKIKALHI KDMDVVVEPGIGWIELNEYLKPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRENVINLQAVLPNGDVIKTGSRARKSAAGYDLARLIIGSEGTLG VITEVTLRLQKLPSHSVVAMCNFQT | |||
| Full Sequence |
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| Protein Sequence Length: 557 Download |
| MAASLLRLSR PRRALLPLSA LRLPLSTQPL PHPRDPSSNS NGRLPPFLSF LAAAAAAAAG 60 GTAATVALCD SERRDHRVGG KESTELVVRG ERKSVPREFV DELASFLGEK LTVDYDERSF 120 HGTPQNSFHK AVNVPDVVVF PSSQDEVQQI VVTCNKYKVP IVPYGGATSI EGHTLAPHGG 180 VCIDMSSMKK IKALHIKDMD VVVEPGIGWI ELNEYLKPYG LFFPLDPGPG ATIGGMCATR 240 CSGSLAVRYG TMRENVINLQ AVLPNGDVIK TGSRARKSAA GYDLARLIIG SEGTLGVITE 300 VTLRLQKLPS HSVVAMCNFQ TIKDAADVAI ATMLSGIQVS RVELLDEVQI RAINMANGKS 360 LPEVPTLMFE FIGTEAYALE QTLLVQKIAA EHQGSDFVFV EEADAKEELW KIRKEALWAG 420 FAMEPDHEAM ITDVCVPLSR LAECISVSKR LLDASPLTCM VIAHAGDGNF HTIILFDPSQ 480 EDQRREAERL NHFMVHTALS MEGTCTGEHG VGTGKMKYLE KELGMESLRT MKRIKAALDP 540 NNIMNPGKLI PPHVCI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 7.0e-50 | 134 | 555 | 427 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 6.0e-69 | 308 | 549 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 1.0e-88 | 138 | 548 | 415 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 6.0e-117 | 102 | 552 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 32 | 556 | 525 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC81560.1 | 0 | 43 | 556 | 52 | 551 | hypothetical protein OsI_24999 [Oryza sativa Indica Group] |
| GenBank | EEE66611.1 | 0 | 68 | 556 | 71 | 548 | hypothetical protein OsJ_23188 [Oryza sativa Japonica Group] |
| RefSeq | NP_001142976.1 | 0 | 1 | 556 | 1 | 555 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | XP_002461502.1 | 0 | 1 | 556 | 1 | 574 | hypothetical protein SORBIDRAFT_02g003640 [Sorghum bicolor] |
| RefSeq | XP_002524111.1 | 0 | 32 | 556 | 27 | 555 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 4e-39 | 137 | 550 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 4e-39 | 137 | 550 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 4e-39 | 137 | 550 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 4e-39 | 137 | 550 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 4e-39 | 137 | 550 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| photorespiration | RXN-969 | EC-1.1.3 | glycolate oxidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG888859 | 277 | 267 | 543 | 0 |
| EX265038 | 323 | 149 | 470 | 0 |
| FL811189 | 260 | 254 | 513 | 0 |
| EX440808 | 332 | 110 | 441 | 0 |
| CJ683021 | 256 | 223 | 478 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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