Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g64340.1 |
Family | CE8 |
Protein Properties | Length: 347 Molecular Weight: 37781.7 Isoelectric Point: 8.2008 |
Chromosome | Chromosome/Scaffold: 1 Start: 63544429 End: 63545850 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 60 | 338 | 0 |
DEFKTIQSAIDAVPVGNYEWIIVHLRSGIYTEKVVIPETKPFIFVRGNGKGRTSVSYESASPHNAESATFAVHADNVVVFGLSFRNAARAGLPNNPEIRT VAAMVSGDKVAFYHCAFYSPHHTLYDHTGRHYYESCYIQGNIDFIFGGAQSIFQTTEIFVKPDRRTPILGSITAQDRKVEQDSGGFVFLKGKVYGVGEVY LGRANEAYSRVVFVNTYLSKTINPAGWTNYGYSGSTEHVTLGEFNCTGPGADASQRVPWSRQLTQADAAKFLTVDFIDG |
Full Sequence |
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Protein Sequence Length: 347 Download |
MARPTLLLPC ILAAASAVLS SPLFCDAHGK TSGKSADIVN GPLLTTKLNA KRTLIVGPND 60 EFKTIQSAID AVPVGNYEWI IVHLRSGIYT EKVVIPETKP FIFVRGNGKG RTSVSYESAS 120 PHNAESATFA VHADNVVVFG LSFRNAARAG LPNNPEIRTV AAMVSGDKVA FYHCAFYSPH 180 HTLYDHTGRH YYESCYIQGN IDFIFGGAQS IFQTTEIFVK PDRRTPILGS ITAQDRKVEQ 240 DSGGFVFLKG KVYGVGEVYL GRANEAYSRV VFVNTYLSKT INPAGWTNYG YSGSTEHVTL 300 GEFNCTGPGA DASQRVPWSR QLTQADAAKF LTVDFIDGKD WLPAFY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 7.0e-79 | 61 | 342 | 283 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 2.0e-81 | 52 | 345 | 302 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 6.0e-84 | 47 | 343 | 309 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 6.0e-90 | 62 | 342 | 286 | + probable pectinesterase | ||
PLN02480 | PLN02480 | 0 | 30 | 346 | 319 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 1 | 345 | 1 | 345 | unknown [Glycine max] |
GenBank | EAZ26679.1 | 0 | 20 | 286 | 20 | 284 | hypothetical protein OsJ_10583 [Oryza sativa Japonica Group] |
RefSeq | NP_001049912.1 | 0 | 20 | 346 | 20 | 344 | Os03g0309400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146436.1 | 0 | 37 | 346 | 37 | 345 | hypothetical protein LOC100280019 [Zea mays] |
RefSeq | XP_002457946.1 | 0 | 37 | 346 | 37 | 345 | hypothetical protein SORBIDRAFT_03g022950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9e-34 | 56 | 344 | 5 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-27 | 61 | 342 | 14 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.000000000001 | 62 | 345 | 18 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.000000000001 | 62 | 345 | 18 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.000000000001 | 62 | 345 | 18 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |