| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g69760.1 |
| Family | GH28 |
| Protein Properties | Length: 467 Molecular Weight: 50370.2 Isoelectric Point: 7.1686 |
| Chromosome | Chromosome/Scaffold: 1 Start: 68220774 End: 68224414 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 151 | 441 | 0 |
| ATEIKGTLEAPSNRSVWLDRPSDLSERWIAFEDVDHLHVMGGGTINGNGHEWWINSCKVNKTMPCVRGPTALYFQSCEHLVVEDLQVRDSMQMHVVIAYS WKVLVSRLFVTAPGWSPNTDGIHVSNSRDVLISSCIISTGDDCISIVSGSAFVRATGIFCGPGHGISIGSLGANKSWAHVSDVLVEKATLVGTTNGVRIK TWQGGQGFAERITFQDIKMYNVTNPIIIDQNYCDSKTPCSEQESAVAIRNIRYSSIHGTSASKVAVNFICSKAVHCDGIVMQDVSLAGTGS | |||
| Full Sequence |
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| Protein Sequence Length: 467 Download |
| MESLAHFRVS KWPTDSGPLC RCLIGPSLRI GNGTRRRLVN WAIVERSTAA PGTGRAYYDG 60 NPYVGKLGQI RMHGQQAKAA TVRMGPRKLL LASITTVSIF LHMFPHAHSE TDAFPPEAAD 120 GPYASGPELS PGPALSVFDV DDYGASAGND ATEIKGTLEA PSNRSVWLDR PSDLSERWIA 180 FEDVDHLHVM GGGTINGNGH EWWINSCKVN KTMPCVRGPT ALYFQSCEHL VVEDLQVRDS 240 MQMHVVIAYS WKVLVSRLFV TAPGWSPNTD GIHVSNSRDV LISSCIISTG DDCISIVSGS 300 AFVRATGIFC GPGHGISIGS LGANKSWAHV SDVLVEKATL VGTTNGVRIK TWQGGQGFAE 360 RITFQDIKMY NVTNPIIIDQ NYCDSKTPCS EQESAVAIRN IRYSSIHGTS ASKVAVNFIC 420 SKAVHCDGIV MQDVSLAGTG SYLTCSSLNA RVMELGLISP YCRSDM* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 6.0e-69 | 153 | 451 | 305 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 4.0e-72 | 153 | 436 | 284 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-97 | 154 | 446 | 293 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-104 | 153 | 462 | 312 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-115 | 154 | 436 | 285 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL53778.1 | 0 | 147 | 466 | 116 | 437 | unknown [Zea mays] |
| GenBank | EAY89054.1 | 0 | 84 | 466 | 1 | 411 | hypothetical protein OsI_10538 [Oryza sativa Indica Group] |
| GenBank | EAZ26072.1 | 0 | 84 | 466 | 1 | 411 | hypothetical protein OsJ_09925 [Oryza sativa Japonica Group] |
| RefSeq | NP_001049387.1 | 0 | 84 | 466 | 1 | 438 | Os03g0216800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002468269.1 | 0 | 116 | 466 | 1 | 398 | hypothetical protein SORBIDRAFT_01g042735 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-17 | 192 | 448 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-17 | 192 | 448 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-17 | 192 | 448 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-17 | 192 | 448 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-17 | 192 | 448 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BQ840584 | 179 | 154 | 332 | 0 |
| EE093402 | 250 | 177 | 426 | 0 |
| EC945774 | 242 | 196 | 437 | 0 |
| EE091344 | 243 | 194 | 436 | 0 |
| EH773725 | 233 | 186 | 418 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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