Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g76890.1 |
Family | GH28 |
Protein Properties | Length: 463 Molecular Weight: 49488.3 Isoelectric Point: 6.7204 |
Chromosome | Chromosome/Scaffold: 1 Start: 73318544 End: 73321685 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 424 | 0 |
ADGGGAALVVPEGKWLTGPFNLTSHFTLFLHRGAEILASQDLNDWPLIAPLPSYGRGRDEPGPRYSNFIGGSNLTDVIITGQNGTINGQGQVWWDKYHAK ELTYTRGYLLELLYSHDIIISNVTFVDAPSWNLHPTYCTNVTISGVTILAPVHSPNTDGIDPDSSSYVKIEDCYIVSGDDCIAVKSGWDEYGIKFNMPSQ HIVVRRLTCISPTSAMIALGSEMSGGIQDVRAEDNIAINTESAVRIKSGVGRGGFVKDVFVRGLSLHTMKWVFWMTGNYGQHPDNSSNPKALPEVTGINY RDVFAENVTMAGRMEGIPNDPYTGICMSNVTAQLAPDAKKLQWNCTDVKGV |
Full Sequence |
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Protein Sequence Length: 463 Download |
MLTRSALHVA VAALLLCAAA VGGAGASRRP AAAGGSCCRK HVKRITEYGA VGDGKTLNTA 60 AFARAVADLS RRAADGGGAA LVVPEGKWLT GPFNLTSHFT LFLHRGAEIL ASQDLNDWPL 120 IAPLPSYGRG RDEPGPRYSN FIGGSNLTDV IITGQNGTIN GQGQVWWDKY HAKELTYTRG 180 YLLELLYSHD IIISNVTFVD APSWNLHPTY CTNVTISGVT ILAPVHSPNT DGIDPDSSSY 240 VKIEDCYIVS GDDCIAVKSG WDEYGIKFNM PSQHIVVRRL TCISPTSAMI ALGSEMSGGI 300 QDVRAEDNIA INTESAVRIK SGVGRGGFVK DVFVRGLSLH TMKWVFWMTG NYGQHPDNSS 360 NPKALPEVTG INYRDVFAEN VTMAGRMEGI PNDPYTGICM SNVTAQLAPD AKKLQWNCTD 420 VKGVASGVSP KPCPELGAVG KPCTFPEEEL VIGPPELPKC TY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-15 | 40 | 433 | 419 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-17 | 45 | 431 | 402 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-19 | 45 | 430 | 405 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-23 | 74 | 332 | 268 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-51 | 45 | 411 | 407 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 38 | 462 | 58 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | NP_001048813.1 | 0 | 1 | 462 | 1 | 458 | Os03g0124900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151102.1 | 0 | 27 | 462 | 29 | 463 | glycoside hydrolase, family 28 [Zea mays] |
RefSeq | XP_002277736.1 | 0 | 38 | 462 | 46 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002468601.1 | 0 | 32 | 462 | 34 | 463 | hypothetical protein SORBIDRAFT_01g048880 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.00053e-42 | 45 | 416 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.00053e-42 | 45 | 416 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.00053e-42 | 45 | 416 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.00053e-42 | 45 | 416 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000007 | 88 | 379 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |