| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi2g11380.1 |
| Family | GH28 |
| Protein Properties | Length: 500 Molecular Weight: 52171.4 Isoelectric Point: 6.9341 |
| Chromosome | Chromosome/Scaffold: 2 Start: 9641701 End: 9644039 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 130 | 468 | 0 |
| WDTACQDAGEGVVVAAAGHSFLVRSTVFTGPCQGSVTLQIDGTIVAPSEPTEWPANSKRNWLVFYKADGVSLRGAGLIDGKGQKWWDLPCKPHKGGNTHG PCDSPVALRFFMSNNVTVQGLKVQNSPEFHFRFDSCRGVHVHGLSISSPALSPNTDGIHVENTQDVLIANTVVSNGDDCVSIGAGTLNVHIENVTCGPGH GISIGSLGKQGTRACVSNITVRNAVIRHSDNGVRIKTWQGGSGSVSGVTFENVRMDAVRNPIIIDQYYCLSKSCENATTAVFVNGVTYSGIRGTYDVRGP PIHFGCSDAVPCTNITLSGVELLPATGDTVDSPFCWNVY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 500 Download |
| MEVTARTAIT LLLAAVVALS FLSDAGVQGV RGYRHHHHAR HTRHNSARPP SSSHAPGPAS 60 PRRAPSPAHH GSSPPAPPAR APSGPSPMPG APAPAPGDGE AADNVYDVIK DFGAAGDGVT 120 DDTDAIKTAW DTACQDAGEG VVVAAAGHSF LVRSTVFTGP CQGSVTLQID GTIVAPSEPT 180 EWPANSKRNW LVFYKADGVS LRGAGLIDGK GQKWWDLPCK PHKGGNTHGP CDSPVALRFF 240 MSNNVTVQGL KVQNSPEFHF RFDSCRGVHV HGLSISSPAL SPNTDGIHVE NTQDVLIANT 300 VVSNGDDCVS IGAGTLNVHI ENVTCGPGHG ISIGSLGKQG TRACVSNITV RNAVIRHSDN 360 GVRIKTWQGG SGSVSGVTFE NVRMDAVRNP IIIDQYYCLS KSCENATTAV FVNGVTYSGI 420 RGTYDVRGPP IHFGCSDAVP CTNITLSGVE LLPATGDTVD SPFCWNVYGN ATTPTVPPVA 480 CLMDGVPRNV DDSSSLKCY* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 9.0e-67 | 128 | 478 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 9.0e-71 | 129 | 482 | 360 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-84 | 127 | 451 | 328 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-92 | 150 | 451 | 303 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 9.0e-110 | 127 | 484 | 360 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD86981.1 | 0 | 105 | 499 | 17 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAY73623.1 | 0 | 20 | 499 | 23 | 503 | hypothetical protein OsI_01510 [Oryza sativa Indica Group] |
| RefSeq | NP_001042805.1 | 0 | 28 | 499 | 29 | 503 | Os01g0296200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150436.1 | 0 | 1 | 499 | 1 | 499 | polygalacturonase [Zea mays] |
| RefSeq | XP_002455500.1 | 0 | 1 | 499 | 1 | 506 | hypothetical protein SORBIDRAFT_03g012280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 1e-28 | 188 | 451 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-28 | 188 | 451 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-28 | 188 | 451 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-28 | 188 | 451 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 1e-28 | 188 | 451 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
