Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g11470.1 |
Family | CE8 |
Protein Properties | Length: 334 Molecular Weight: 36754.8 Isoelectric Point: 8.7221 |
Chromosome | Chromosome/Scaffold: 2 Start: 9734761 End: 9736050 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 40 | 321 | 0 |
IYVNQRKPADFRSVQKAIDSIPWGNKQWIRIHVAAGVYFEKVNVPLNKSFILLEGEGKDQTFIEWGDHADGKTNTASSPTFASYATDFMARDITFKNTYY GVRDMAPAVAALVAGDRSSFHRCGFISVQDTLSDLAGRHYYHKCYIEGAMDFIFGNARSIFEECEVTTGKTPVSPGYITAQGRDSEKEDTGFVFKRCKLG GVTPTYLGRAWRAYARVIFYKTDMSSVVVSQGWDAWNYDGKESTLTMVESECTGQGSNRTGRMPWGKAVHPKQIARFLSLSY |
Full Sequence |
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Protein Sequence Length: 334 Download |
MRKLGISPLA AVLSLAIVVA LTAIITPQGC DAAGIVARSI YVNQRKPADF RSVQKAIDSI 60 PWGNKQWIRI HVAAGVYFEK VNVPLNKSFI LLEGEGKDQT FIEWGDHADG KTNTASSPTF 120 ASYATDFMAR DITFKNTYYG VRDMAPAVAA LVAGDRSSFH RCGFISVQDT LSDLAGRHYY 180 HKCYIEGAMD FIFGNARSIF EECEVTTGKT PVSPGYITAQ GRDSEKEDTG FVFKRCKLGG 240 VTPTYLGRAW RAYARVIFYK TDMSSVVVSQ GWDAWNYDGK ESTLTMVESE CTGQGSNRTG 300 RMPWGKAVHP KQIARFLSLS YVSADGWLDA QPR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02480 | PLN02480 | 8.0e-87 | 38 | 330 | 305 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-87 | 40 | 328 | 291 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 9.0e-92 | 35 | 328 | 305 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 4.0e-92 | 28 | 332 | 313 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-115 | 34 | 332 | 307 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 38 | 332 | 43 | 341 | unnamed protein product [Vitis vinifera] |
GenBank | EAY73651.1 | 0 | 36 | 333 | 38 | 335 | hypothetical protein OsI_01540 [Oryza sativa Indica Group] |
GenBank | EAZ11567.1 | 0 | 36 | 333 | 38 | 284 | hypothetical protein OsJ_01434 [Oryza sativa Japonica Group] |
RefSeq | XP_002263748.1 | 0 | 9 | 332 | 8 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002455508.1 | 0 | 1 | 333 | 1 | 338 | hypothetical protein SORBIDRAFT_03g012410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 36 | 330 | 5 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-34 | 35 | 328 | 1 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.0000000000001 | 50 | 273 | 18 | 280 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.0000000000001 | 50 | 273 | 18 | 280 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.0000000000001 | 50 | 273 | 18 | 280 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |