| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi2g11860.1 |
| Family | CE8 |
| Protein Properties | Length: 562 Molecular Weight: 60471.6 Isoelectric Point: 8.9767 |
| Chromosome | Chromosome/Scaffold: 2 Start: 10176180 End: 10181029 |
| Description | pectin methylesterase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 251 | 546 | 0 |
| AVVAKDGSGGYTTVSAAVTAAPANSKSRYVIYIKAGAYLENVEVGKNQKNLMFIGDGIGKTVIKASRNVVDGYTTFRSATVAVVGNNFIARDLTIENSAG PSKHQAVALRVGADLSAFYRCSFVGYQDTLYVHSLRQFFRDCDVYGTVDFVFGNSAVVLQGCSLYARRPLAGQSNTYTAQGRTDPNQNTGISVQRCKVSA ASDLAAVQSSFRTYLGRPWQQYSRTVFMESQMDSVVNPAGWLEWNGNFALDTLYYGEYQNTGAGAATSNRVKWKGYRVITSASEASAFTVGSFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 562 Download |
| MPHLHEKLTA PLLLLLLTLT LVAAAASDVP FYPSAEAAAA AHCEGTLYPE LCLSTLATVP 60 DLHKKPLPDV ICATVNRTEV EVADMASNCS SFLQQGKSLP PRDRVAIADC IELLGTTMDE 120 LQATTSDLQQ PSNGATVVDH VMTVLSGAIT NQHTCLSGFT YHGPRNGGQV SLARPYMEPG 180 IRHISRMVSN TLAMAKKMRS TKPNSPSPSV QVQRRQPFTG YGQMVKGFPR WVRPGDRRLL 240 QAAASGITAN AVVAKDGSGG YTTVSAAVTA APANSKSRYV IYIKAGAYLE NVEVGKNQKN 300 LMFIGDGIGK TVIKASRNVV DGYTTFRSAT VAVVGNNFIA RDLTIENSAG PSKHQAVALR 360 VGADLSAFYR CSFVGYQDTL YVHSLRQFFR DCDVYGTVDF VFGNSAVVLQ GCSLYARRPL 420 AGQSNTYTAQ GRTDPNQNTG ISVQRCKVSA ASDLAAVQSS FRTYLGRPWQ QYSRTVFMES 480 QMDSVVNPAG WLEWNGNFAL DTLYYGEYQN TGAGAATSNR VKWKGYRVIT SASEASAFTV 540 GSFIDGDVWL PRTSVPFSTG L* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02713 | PLN02713 | 1.0e-173 | 43 | 561 | 545 | + Probable pectinesterase/pectinesterase inhibitor |
| pfam01095 | Pectinesterase | 0 | 250 | 547 | 298 | + Pectinesterase. |
| PLN02313 | PLN02313 | 0 | 33 | 561 | 539 | + Pectinesterase/pectinesterase inhibitor |
| PLN02484 | PLN02484 | 0 | 43 | 561 | 522 | + probable pectinesterase/pectinesterase inhibitor |
| PLN02301 | PLN02301 | 0 | 101 | 561 | 463 | + pectinesterase/pectinesterase inhibitor |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACQ85264.1 | 0 | 39 | 561 | 55 | 564 | pectin methylesterase [Musa acuminata AAA Group] |
| GenBank | EEC70505.1 | 0 | 30 | 561 | 36 | 565 | hypothetical protein OsI_01594 [Oryza sativa Indica Group] |
| GenBank | EEE54425.1 | 0 | 30 | 561 | 36 | 584 | hypothetical protein OsJ_01485 [Oryza sativa Japonica Group] |
| RefSeq | NP_001146685.1 | 0 | 1 | 561 | 4 | 563 | hypothetical protein LOC100280285 [Zea mays] |
| RefSeq | XP_002455538.1 | 0 | 29 | 561 | 35 | 576 | hypothetical protein SORBIDRAFT_03g012830 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 244 | 561 | 2 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 247 | 561 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 6e-28 | 248 | 551 | 3 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 6e-28 | 248 | 551 | 3 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-27 | 248 | 551 | 3 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
