Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g12400.1 |
Family | GH28 |
Protein Properties | Length: 625 Molecular Weight: 65368.9 Isoelectric Point: 7.9772 |
Chromosome | Chromosome/Scaffold: 2 Start: 10741281 End: 10743664 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 241 | 584 | 0 |
KAACSAGSATLVVPSDGVFTITSTVFAGPCKPGLTFQIDGVLMPPDGPASWPEADSRRQWVTFYKADGMTLNGRGTIEGNGEEWWNLPCKPHRGPNGSTL RVPCDSPALVRFFASNNVTVQGLRIENSPQFHLKFDGCEQVRIDGLFISSPALSPNTDGVHVENTSSVQIYNSRINNGDDCISIGAGCSGVHIENVTCGH GHGISIGSLGVRNTRACVSNVTVRNARILDSDNGVRIKTWQGGAGSVSAVEFVGVRMENVRNCIVIDQYYCTGGGCANQTSAVRVAGVTYRDIRGTYRPS GSGHGEAAPPIRFACSDSVACTGITMDDVELLPAGGGGSLEAPL |
Full Sequence |
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Protein Sequence Length: 625 Download |
MALVPLCIPI ADARAILQYH HHRKHRHGHH TINSGQTHIF LPPAALPVSY DVDSPAESPA 60 PLPRPVTRHD DDKAPCPLSS RPTPSMAPPP VGAPRSPAPA FSLAKPHVLP PPAEPPTLPP 120 TPSQSPRLSP AKPPALNPAK SPTPPQHYPI PPVALSPAHA PANSPAPLPH RAIPAKPPSF 180 GPTKPPMLPP APLPPAMANS KPPTTGGSVF DVRAFGASGS GNGNGNGSSS NDTRAFRAAW 240 KAACSAGSAT LVVPSDGVFT ITSTVFAGPC KPGLTFQIDG VLMPPDGPAS WPEADSRRQW 300 VTFYKADGMT LNGRGTIEGN GEEWWNLPCK PHRGPNGSTL RVPCDSPALV RFFASNNVTV 360 QGLRIENSPQ FHLKFDGCEQ VRIDGLFISS PALSPNTDGV HVENTSSVQI YNSRINNGDD 420 CISIGAGCSG VHIENVTCGH GHGISIGSLG VRNTRACVSN VTVRNARILD SDNGVRIKTW 480 QGGAGSVSAV EFVGVRMENV RNCIVIDQYY CTGGGCANQT SAVRVAGVTY RDIRGTYRPS 540 GSGHGEAAPP IRFACSDSVA CTGITMDDVE LLPAGGGGSL EAPLGHQPPY CWNAYGVMAT 600 LTVPPVNCLQ EGRPESLQDQ LANC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 9.0e-55 | 251 | 610 | 365 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 5.0e-55 | 210 | 580 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-71 | 232 | 571 | 346 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-84 | 250 | 571 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-87 | 232 | 605 | 377 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE54470.1 | 0 | 208 | 624 | 344 | 760 | hypothetical protein OsJ_01569 [Oryza sativa Japonica Group] |
RefSeq | NP_001042921.1 | 0 | 208 | 624 | 344 | 759 | Os01g0329300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001132604.2 | 0 | 192 | 624 | 80 | 502 | hypothetical protein LOC100194076 [Zea mays] |
RefSeq | XP_002455572.1 | 0 | 93 | 624 | 131 | 693 | hypothetical protein SORBIDRAFT_03g013310 [Sorghum bicolor] |
RefSeq | XP_002455574.1 | 0 | 207 | 624 | 114 | 548 | hypothetical protein SORBIDRAFT_03g013330 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 6e-24 | 298 | 542 | 56 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 6e-24 | 298 | 542 | 56 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 6e-24 | 298 | 542 | 56 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 6e-24 | 298 | 542 | 56 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 6e-24 | 298 | 542 | 56 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY254539 | 305 | 290 | 594 | 0 |
DW479564 | 306 | 232 | 537 | 0 |
ES849368 | 300 | 263 | 562 | 0 |
DY277859 | 339 | 200 | 538 | 0 |
DV135481 | 282 | 232 | 511 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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