Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g13740.1 |
Family | GH28 |
Protein Properties | Length: 418 Molecular Weight: 43236.9 Isoelectric Point: 4.6546 |
Chromosome | Chromosome/Scaffold: 2 Start: 12327861 End: 12329293 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 402 | 0 |
KSACGAAGQHTVVIPKGEFLCGPVNFSGPCEGDVTIQIDGTLLATNDLPKYGGGSWINILKVDNLVITGSGTLDGQGSNVWTKDPQAKAGYPNTLVLDYV KNGSVSGITLLNSKFFHMNIYMSSDVKIDNVTITAPGDSPNTDGIHIGDSSNIHVTGATIGTGDDCISIGGGSASITVTGVTCGPGQGISVGCLGRYKDE KDVSDVTVKDCVLRSSTNGVRIKTYVDAVKSITASNLTFENIKMEDVANPIIIDQNYCPEKICTAKSKSAVTVKDIIFRNITGTSSTPEAVSLLCSEKQP CSGVELIDVNVEYSGKNNKTMGVCTNAKG |
Full Sequence |
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Protein Sequence Length: 418 Download |
MALCNDATWL VFILVAMCAV SGAKRPVAKE SAGPAPAPAP EEASGDGGTF DITKLGAASD 60 GKTDCSKELE EAWKSACGAA GQHTVVIPKG EFLCGPVNFS GPCEGDVTIQ IDGTLLATND 120 LPKYGGGSWI NILKVDNLVI TGSGTLDGQG SNVWTKDPQA KAGYPNTLVL DYVKNGSVSG 180 ITLLNSKFFH MNIYMSSDVK IDNVTITAPG DSPNTDGIHI GDSSNIHVTG ATIGTGDDCI 240 SIGGGSASIT VTGVTCGPGQ GISVGCLGRY KDEKDVSDVT VKDCVLRSST NGVRIKTYVD 300 AVKSITASNL TFENIKMEDV ANPIIIDQNY CPEKICTAKS KSAVTVKDII FRNITGTSST 360 PEAVSLLCSE KQPCSGVELI DVNVEYSGKN NKTMGVCTNA KGIAKDTLQA LACVSDV* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-82 | 50 | 415 | 369 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-83 | 49 | 408 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-86 | 50 | 416 | 378 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-104 | 77 | 401 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-120 | 49 | 401 | 359 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG34252.1 | 0 | 5 | 414 | 6 | 427 | exopolygalacturonase precursor [Zea mays] |
GenBank | EAY74295.1 | 0 | 5 | 414 | 6 | 407 | hypothetical protein OsI_02183 [Oryza sativa Indica Group] |
RefSeq | NP_001043199.1 | 0 | 10 | 414 | 11 | 407 | Os01g0517500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001105432.1 | 0 | 1 | 413 | 1 | 409 | exopolygalacturonase precursor [Zea mays] |
RefSeq | NP_001141594.1 | 0 | 5 | 414 | 6 | 427 | hypothetical protein LOC100273711 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-21 | 84 | 379 | 25 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 84 | 379 | 25 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 84 | 379 | 25 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-21 | 84 | 379 | 25 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-21 | 84 | 379 | 25 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |