Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g14880.1 |
Family | GH28 |
Protein Properties | Length: 331 Molecular Weight: 35121.5 Isoelectric Point: 7.2351 |
Chromosome | Chromosome/Scaffold: 2 Start: 13348895 End: 13350765 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 79 | 273 | 0 |
VSVASIVGVMVHNFTISSPENSPNTDGIHLQNYKDVNIHHTDLACGDDCVSIQTGCSDISIHNANCGPGHGISIGGLGRYNTKACVSNITVRDVSMFKTM TGVRIKTWQGGSGLVQGIRFANIQVSEVQTPIMIDQFYCDKRAAAGACTNQSSAVVVSGVQYENIRGTYTTKATHFACSDSAPCSEITMAGIQLQ |
Full Sequence |
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Protein Sequence Length: 331 Download |
MHGRNLTGTI SVPSFAGALE GYQINRATIA RSPPSKFDRT TSNPHERNEI EGTLWDGSEI 60 RCAASARPCV AGACRLCGVS VASIVGVMVH NFTISSPENS PNTDGIHLQN YKDVNIHHTD 120 LACGDDCVSI QTGCSDISIH NANCGPGHGI SIGGLGRYNT KACVSNITVR DVSMFKTMTG 180 VRIKTWQGGS GLVQGIRFAN IQVSEVQTPI MIDQFYCDKR AAAGACTNQS SAVVVSGVQY 240 ENIRGTYTTK ATHFACSDSA PCSEITMAGI QLQPLMVLPG HHPCSSSSSS SSPFCWQAFG 300 ELYTPTVPPM PCLQTGKSAG NRVLSDHEQY * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-33 | 94 | 273 | 183 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-34 | 79 | 272 | 195 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-42 | 79 | 273 | 196 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-47 | 79 | 272 | 195 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-50 | 79 | 318 | 241 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAG98413.1 | 0 | 77 | 328 | 30 | 269 | unnamed protein product [Oryza sativa Japonica Group] |
GenBank | EEC79746.1 | 0 | 77 | 328 | 293 | 532 | hypothetical protein OsI_21117 [Oryza sativa Indica Group] |
GenBank | EEE64806.1 | 0 | 77 | 328 | 293 | 532 | hypothetical protein OsJ_19662 [Oryza sativa Japonica Group] |
RefSeq | NP_001056414.1 | 0 | 77 | 328 | 71 | 310 | Os05g0578600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002441571.1 | 0 | 77 | 328 | 296 | 535 | hypothetical protein SORBIDRAFT_09g029500 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-19 | 93 | 222 | 191 | 320 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000007 | 87 | 272 | 133 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000007 | 87 | 272 | 133 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000007 | 87 | 272 | 133 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000007 | 87 | 272 | 133 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CJ808527 | 244 | 86 | 329 | 0 |
GO793346 | 252 | 77 | 328 | 0 |
GO844325 | 252 | 77 | 328 | 0 |
EB402734 | 249 | 77 | 325 | 0 |
JG909911 | 238 | 86 | 323 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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