Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g18030.1 |
Family | GH28 |
Protein Properties | Length: 455 Molecular Weight: 48290.4 Isoelectric Point: 4.6733 |
Chromosome | Chromosome/Scaffold: 2 Start: 16034768 End: 16037340 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 408 | 0 |
SSDTYLNVPAGKSYQIWPLTLAGPCRGEIKLLISGNIVAPENPDDWQGSDGGQWLHFLGVKGLAISGGGIVDGRGQQWWARQPQNSSCESENCTASQPPA AAPKAVHFEDCKEITVMGITVQNSPREHLAFTRCSVVKANYLRVTAPVDSPGTVGALLVNSSDVRIMDDLFSVGGDCVSMVGRCRDVRLRAVSCGPGHGI SIGGLGENGSLHKIEKIKMDTLFFTNTKYGLRIKTHEDGCGFVRKVKFAHILMRNVSDPIVIDQHYSYSNQGTSCEFPNVTLVEKIEYNDITGTSATEQA VKFACSDTMPCRRLSMSGVNLTMAGGGGNVSAYCNQA |
Full Sequence |
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Protein Sequence Length: 455 Download |
MAPPLLPLLL AALAFVALLL SPGTAEARRL LTLADFGAVG DGIANDTQAF LDAWAAACGG 60 TSSDKANLND PSSDTYLNVP AGKSYQIWPL TLAGPCRGEI KLLISGNIVA PENPDDWQGS 120 DGGQWLHFLG VKGLAISGGG IVDGRGQQWW ARQPQNSSCE SENCTASQPP AAAPKAVHFE 180 DCKEITVMGI TVQNSPREHL AFTRCSVVKA NYLRVTAPVD SPGTVGALLV NSSDVRIMDD 240 LFSVGGDCVS MVGRCRDVRL RAVSCGPGHG ISIGGLGENG SLHKIEKIKM DTLFFTNTKY 300 GLRIKTHEDG CGFVRKVKFA HILMRNVSDP IVIDQHYSYS NQGTSCEFPN VTLVEKIEYN 360 DITGTSATEQ AVKFACSDTM PCRRLSMSGV NLTMAGGGGN VSAYCNQAFG RNFGAIVPDS 420 CLGKEDFVQL QAPGTAAAAD EEEEDDDEDY AADW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-56 | 36 | 398 | 364 | + polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-56 | 24 | 424 | 402 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-57 | 31 | 402 | 375 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-61 | 24 | 418 | 397 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-102 | 27 | 433 | 411 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY98883.1 | 0 | 25 | 431 | 24 | 417 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
GenBank | EEE64554.1 | 0 | 25 | 433 | 30 | 425 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
RefSeq | NP_001056199.1 | 0 | 25 | 433 | 30 | 425 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151374.1 | 0 | 26 | 449 | 24 | 426 | polygalacturonase [Zea mays] |
RefSeq | XP_002440168.1 | 0 | 26 | 446 | 24 | 422 | hypothetical protein SORBIDRAFT_09g027160 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000009 | 136 | 393 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000003 | 134 | 405 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000003 | 134 | 405 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000003 | 134 | 405 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000003 | 134 | 405 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |