y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g18040.1 |
Family | GH28 |
Protein Properties | Length: 446 Molecular Weight: 47186.9 Isoelectric Point: 4.6309 |
Chromosome | Chromosome/Scaffold: 2 Start: 16041650 End: 16043767 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 401 | 0 |
WSAACGTGDTTYLNVPAGKSYQIWPLTLSGPCRNDIKLLISGNIVAPENPDDWQEEGSSSQVTQWLHFRGMSGLALSGGGIVDGRGQQWWARQTQNSNSS QPQPAMAAAPKAVHFEDCEDVSVMGITVQNSPRQHLAFTRCYNVKANYLRVTAPEDSPGTVGVLLASSTNVHVMDDLFSVGGDCVSIVGNCTDVRLRAVS CGPGAGISIGDLGEDQSQHKIEKIKMDTLFISNTKNGVRVKTHEDGCGFARKVKFAQILMRNVSNPIIIDQHYSYSNRGTPCGTPNASAVAVEKINYNDI TGTSATELAVTFACSDAMPCRRLSMSGVNLTRAGGGGNVSAYCHQA |
Full Sequence |
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Protein Sequence Length: 446 Download |
MALRTSRTLP PLLLAALAVA LLLLSAAEAR VLLTLDDFGA VGDGIANDTQ AFVDAWSAAC 60 GTGDTTYLNV PAGKSYQIWP LTLSGPCRND IKLLISGNIV APENPDDWQE EGSSSQVTQW 120 LHFRGMSGLA LSGGGIVDGR GQQWWARQTQ NSNSSQPQPA MAAAPKAVHF EDCEDVSVMG 180 ITVQNSPRQH LAFTRCYNVK ANYLRVTAPE DSPGTVGVLL ASSTNVHVMD DLFSVGGDCV 240 SIVGNCTDVR LRAVSCGPGA GISIGDLGED QSQHKIEKIK MDTLFISNTK NGVRVKTHED 300 GCGFARKVKF AQILMRNVSN PIIIDQHYSY SNRGTPCGTP NASAVAVEKI NYNDITGTSA 360 TELAVTFACS DAMPCRRLSM SGVNLTRAGG GGNVSAYCHQ AFGRNVGEVV PESCLGEEDF 420 VQLQAPGAAA AVTEEDEDDD DAANW* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-66 | 38 | 414 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-69 | 38 | 427 | 392 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 7.0e-72 | 38 | 391 | 356 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-74 | 34 | 412 | 381 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-117 | 37 | 426 | 391 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY98883.1 | 0 | 26 | 440 | 23 | 438 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
GenBank | EEE64554.1 | 0 | 26 | 440 | 29 | 444 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
RefSeq | NP_001056199.1 | 0 | 26 | 440 | 29 | 444 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151374.1 | 0 | 28 | 442 | 24 | 429 | polygalacturonase [Zea mays] |
RefSeq | XP_002440168.1 | 0 | 28 | 422 | 24 | 408 | hypothetical protein SORBIDRAFT_09g027160 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-20 | 129 | 400 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-20 | 129 | 400 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-20 | 129 | 400 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-20 | 129 | 400 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-20 | 129 | 400 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |