Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g18060.1 |
Family | GH28 |
Protein Properties | Length: 451 Molecular Weight: 47547.5 Isoelectric Point: 7.8214 |
Chromosome | Chromosome/Scaffold: 2 Start: 16050166 End: 16052964 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 94 | 431 | 0 |
AAACASAEQAVLAVPAGKFYRIWPVQLAGPCKEKLKLLIAGTVVAPASPDEWAGRDPTKWLYIYGVDGLSLSGGGTIDGAGKEWWARSCKRKKTQPCNTR PPPKAVHFEECRGVSVQGLTLQNGQQFHLTFTRCIDVKANFLRVIAPADSPNTDGIHLNDSSRVQIMDNLISTGDDCVSMVGNCSHVRVEDISCGPGHGI SIGSLGKNRTTDRVENVRVDTCLLTNTTNGVRIKSWQGGMGSAYNLRFEGIVMKNVSNPIIIDQYYCDQPTPCANQTQAVEVRKVEFVDVRGTSATAQAI KMACSDAVPCRELELKNVNLTVEGGGAAPATAFCYKAY |
Full Sequence |
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Protein Sequence Length: 451 Download |
MPRCRAILFS SPPVSSGIRL AASPVLHVAA AATASLIDPA MALVARSPLS LLLVAAVLLC 60 SGTGEARVLL TLDDFGAVGD GIANDTQAFL DAWAAACASA EQAVLAVPAG KFYRIWPVQL 120 AGPCKEKLKL LIAGTVVAPA SPDEWAGRDP TKWLYIYGVD GLSLSGGGTI DGAGKEWWAR 180 SCKRKKTQPC NTRPPPKAVH FEECRGVSVQ GLTLQNGQQF HLTFTRCIDV KANFLRVIAP 240 ADSPNTDGIH LNDSSRVQIM DNLISTGDDC VSMVGNCSHV RVEDISCGPG HGISIGSLGK 300 NRTTDRVENV RVDTCLLTNT TNGVRIKSWQ GGMGSAYNLR FEGIVMKNVS NPIIIDQYYC 360 DQPTPCANQT QAVEVRKVEF VDVRGTSATA QAIKMACSDA VPCRELELKN VNLTVEGGGA 420 APATAFCYKA YGKTVGTVVP GSCLANHGSS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-77 | 70 | 445 | 381 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-83 | 64 | 443 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-90 | 107 | 424 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-95 | 65 | 440 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-150 | 69 | 449 | 381 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAU43991.1 | 0 | 58 | 446 | 23 | 409 | unknown protein [Oryza sativa Japonica Group] |
GenBank | ACF80870.1 | 0 | 65 | 445 | 29 | 409 | unknown [Zea mays] |
GenBank | ACF88280.1 | 0 | 60 | 445 | 21 | 405 | unknown [Zea mays] |
GenBank | EEC79626.1 | 0 | 58 | 446 | 23 | 409 | hypothetical protein OsI_20838 [Oryza sativa Indica Group] |
RefSeq | XP_002440167.1 | 0 | 60 | 445 | 21 | 406 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-24 | 164 | 416 | 113 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 3e-17 | 94 | 400 | 12 | 319 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1czf_B | 8e-16 | 97 | 414 | 45 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 8e-16 | 97 | 414 | 45 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 0.000000000000001 | 167 | 414 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV471172 | 263 | 37 | 299 | 0 |
DV480974 | 280 | 1 | 280 | 0 |
HX190221 | 242 | 191 | 432 | 0 |
DR739311 | 308 | 62 | 365 | 0 |
EE160973 | 240 | 188 | 427 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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