| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi2g27954.1 |
| Family | PL1 |
| Protein Properties | Length: 383 Molecular Weight: 41309.3 Isoelectric Point: 6.9649 |
| Chromosome | Chromosome/Scaffold: 2 Start: 27109877 End: 27111368 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 115 | 306 | 0 |
| IVFAHDMTIRPKHELVVGSHKTVDGRGAQVVVGEGGACFAVDGASNVIIHGVTIRGCRPKPRGPRGRSESDGDGVSVCEARDVWIDRCSFEDCADGLVDV TRASTGVTVSNSLFTNHDKAMLLGHSDSFDDDRAMRVTVTLNRFGPGLVQRMPRCRYGVFHVVNNDYVKWGMYAIGGSASPNILSLGNRFSA | |||
| Full Sequence |
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| Protein Sequence Length: 383 Download |
| MTILFLLFFF TTILSISSTS SSQINASNTT TLHRRLTLFG SCGTGNPVDD CWRSDPRWAD 60 NRRRLADCGI GFGRNAIGGK NGPTYVVTDP SDDDPSSPAP GTLRYGLTQD GPLWIVFAHD 120 MTIRPKHELV VGSHKTVDGR GAQVVVGEGG ACFAVDGASN VIIHGVTIRG CRPKPRGPRG 180 RSESDGDGVS VCEARDVWID RCSFEDCADG LVDVTRASTG VTVSNSLFTN HDKAMLLGHS 240 DSFDDDRAMR VTVTLNRFGP GLVQRMPRCR YGVFHVVNND YVKWGMYAIG GSASPNILSL 300 GNRFSAGHNK EVTKREDDMA ENDWRNWRWK SVGDLMLNGA FFTASGGPGP EVNAPSFAKS 360 ASMVEQMTAE AGALSCNRDS LC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-26 | 78 | 310 | 248 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-58 | 116 | 304 | 198 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-63 | 120 | 307 | 199 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV32549.1 | 0 | 24 | 382 | 43 | 413 | pectase lyase [Prunus persica] |
| DDBJ | BAB10560.1 | 0 | 5 | 382 | 9 | 410 | pectate lyase [Arabidopsis thaliana] |
| DDBJ | BAI94495.1 | 0 | 1 | 382 | 4 | 407 | pectate lyase [Dianthus caryophyllus] |
| RefSeq | NP_001055106.1 | 0 | 42 | 382 | 37 | 373 | Os05g0293500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_568967.1 | 0 | 5 | 382 | 31 | 432 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 46 | 375 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 46 | 375 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-23 | 108 | 281 | 43 | 213 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 3e-16 | 124 | 305 | 78 | 288 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 3e-16 | 124 | 305 | 78 | 288 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 21 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778688 | 364 | 34 | 383 | 0 |
| FG606120 | 321 | 34 | 343 | 0 |
| DY272271 | 332 | 34 | 353 | 0 |
| DY278910 | 324 | 34 | 346 | 0 |
| CO097456 | 288 | 39 | 315 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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