Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g33080.1 |
Family | GH28 |
Protein Properties | Length: 425 Molecular Weight: 46039.2 Isoelectric Point: 10.2056 |
Chromosome | Chromosome/Scaffold: 2 Start: 33120796 End: 33122637 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 408 | 0 |
WAAACSSSHPSIVLLPKGKKYLTKHVTFSGPCKSNINFMIEGTLVAPPKRSYWIEATIRHWILFKAVRGLTVTGVGTIDGNGKLWWQNSCKVNSKLPCRQ SPTALTFYSCTNLKVNNLKLLNSQQIHMSVERCTDVRIFRLSITAPSSSPNTDGIHIAHSKGVKVRNCMIRTGDDCLSIEDGTKNLHVKNIVCGPGHGIS IGSLGDQNSEAQVANITIDGVRLHGTTNGARIKTWQGGRGYAKNIVFQNMIMDNVWNPIIIDQNYCDSATPCKKQKSAVEVSNVLFKNIRGTSASREAIK LSCSRAAPCHGIALHNVKLTLKRGGGNAKSTCQNAKW |
Full Sequence |
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Protein Sequence Length: 425 Download |
MASNVLIFPA SILVVLFFCC VLAKGDMKVV SLTNGADHRG RSLKSNSVFD VLRYGALGDG 60 HHDDTKGLAK AWAAACSSSH PSIVLLPKGK KYLTKHVTFS GPCKSNINFM IEGTLVAPPK 120 RSYWIEATIR HWILFKAVRG LTVTGVGTID GNGKLWWQNS CKVNSKLPCR QSPTALTFYS 180 CTNLKVNNLK LLNSQQIHMS VERCTDVRIF RLSITAPSSS PNTDGIHIAH SKGVKVRNCM 240 IRTGDDCLSI EDGTKNLHVK NIVCGPGHGI SIGSLGDQNS EAQVANITID GVRLHGTTNG 300 ARIKTWQGGR GYAKNIVFQN MIMDNVWNPI IIDQNYCDSA TPCKKQKSAV EVSNVLFKNI 360 RGTSASREAI KLSCSRAAPC HGIALHNVKL TLKRGGGNAK STCQNAKWKK LGTVMPQPSC 420 NLND* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-95 | 42 | 421 | 381 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-104 | 76 | 407 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-108 | 12 | 418 | 410 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 5.0e-136 | 42 | 421 | 382 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-137 | 13 | 421 | 413 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57273.1 | 0 | 1 | 415 | 1 | 419 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 1 | 418 | 1 | 422 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAZ03178.1 | 0 | 1 | 415 | 1 | 412 | hypothetical protein OsI_25331 [Oryza sativa Indica Group] |
GenBank | EAZ39077.1 | 0 | 1 | 415 | 1 | 419 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 1 | 418 | 1 | 422 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-28 | 143 | 391 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-18 | 148 | 405 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-18 | 148 | 405 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-18 | 148 | 405 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-18 | 148 | 405 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |